Sequence Similarity Clusters for the Entities in PDB 1HVU

Entity #1 | Chains: C,F,I,L
RNA (33 NUCLEOTIDE RNA PSEUDOKNOT) rna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D,G,J
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4323
95 % 253 255 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 253 255 96
70 % 253 255 113
50 % 254 256 151
40 % 255 257 164
30 % 255 257 176
Entity #3 | Chains: B,E,H,K
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 2705
95 % 247 249 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 247 249 120
70 % 247 249 135
50 % 249 251 160
40 % 249 251 175
30 % 249 251 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures