Sequence Similarity Clusters for the Entities in PDB 1HVU

Entity #1 | Chains: C,F,I,L
RNA (33 NUCLEOTIDE RNA PSEUDOKNOT) rna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D,G,J
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 3959
95 % 234 236 106
90 % 234 236 110
70 % 234 236 124
50 % 235 237 149
40 % 235 237 166
30 % 235 237 184
Entity #3 | Chains: B,E,H,K
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 12 2474
95 % 228 230 113
90 % 228 230 117
70 % 228 230 137
50 % 229 231 162
40 % 229 231 178
30 % 229 231 192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.