Sequence Similarity Clusters for the Entities in PDB 1HVU

Entity #1 | Chains: C,F,I,L
RNA (33 NUCLEOTIDE RNA PSEUDOKNOT) rna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D,G,J
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4395
95 % 254 256 112 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 254 256 117
70 % 254 256 130
50 % 255 257 157
40 % 256 258 168
30 % 256 258 179
Entity #3 | Chains: B,E,H,K
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 2737
95 % 248 250 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 248 250 122
70 % 248 250 137
50 % 250 252 164
40 % 250 252 175
30 % 250 252 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures