Sequence Similarity Clusters for the Entities in PDB 1HVU

Entity #1 | Chains: C,F,I,L
RNA (33 NUCLEOTIDE RNA PSEUDOKNOT) rna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D,G,J
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4161
95 % 246 248 88 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 4.0
PDBFlex
90 % 246 248 93
70 % 246 248 111
50 % 247 249 147
40 % 247 249 162
30 % 247 249 179
Entity #3 | Chains: B,E,H,K
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 2583
95 % 240 242 112 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 240 242 116
70 % 240 242 131
50 % 241 243 154
40 % 241 243 172
30 % 241 243 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.