Sequence Similarity Clusters for the Entities in PDB 1HVU

Entity #1 | Chains: C,F,I,L
RNA (33 NUCLEOTIDE RNA PSEUDOKNOT) rna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D,G,J
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4076
95 % 236 238 104 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 236 238 109
70 % 236 238 124
50 % 237 239 152
40 % 237 239 170
30 % 237 239 184
Entity #3 | Chains: B,E,H,K
PROTEIN (HIV-1 REVERSE TRANSCRIPTASE) protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 2547
95 % 230 232 115 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 230 232 118
70 % 230 232 135
50 % 231 233 161
40 % 231 233 178
30 % 231 233 192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.