Sequence Similarity Clusters for the Entities in PDB 1HV4

Entity #1 | Chains: A,C,E,G
HEMOGLOBIN ALPHA-A CHAIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15729
95 % 4 5 7954 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 7 11 2897
70 % 261 327 15
50 % 615 744 4
40 % 620 749 8
30 % 1051 1198 8
Entity #2 | Chains: B,D,F,H
HEMOGLOBIN BETA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13561
95 % 9 12 2345 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 17 1662
70 % 279 341 12
50 % 616 744 4
40 % 621 749 8
30 % 1052 1198 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.