Sequence Similarity Clusters for the Entities in PDB 1HV4

Entity #1 | Chains: A,C,E,G
HEMOGLOBIN ALPHA-A CHAIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16112
95 % 4 5 8114 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 7 11 2966
70 % 266 332 15
50 % 625 754 4
40 % 630 759 8
30 % 1071 1218 8
Entity #2 | Chains: B,D,F,H
HEMOGLOBIN BETA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13865
95 % 9 12 2421 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 17 1709
70 % 284 346 14
50 % 626 754 4
40 % 631 759 8
30 % 1072 1218 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures