Sequence Similarity Clusters for the Entities in PDB 1HV4

Entity #1 | Chains: A,C,E,G
HEMOGLOBIN ALPHA-A CHAIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13828
95 % 4 5 7872 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 7 11 2929
70 % 266 332 17
50 % 625 754 4
40 % 630 759 7
30 % 1109 1294 6
Entity #2 | Chains: B,D,F,H
HEMOGLOBIN BETA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3624
95 % 9 12 2432 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 17 1701
70 % 284 346 14
50 % 626 754 4
40 % 631 759 7
30 % 1110 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures