Sequence Similarity Clusters for the Entities in PDB 1HV4

Entity #1 | Chains: A,C,E,G
HEMOGLOBIN ALPHA-A CHAIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15110
95 % 4 5 7615 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 7 11 2787
70 % 257 321 18
50 % 605 730 5
40 % 610 735 9
30 % 1032 1175 8
Entity #2 | Chains: B,D,F,H
HEMOGLOBIN BETA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13012
95 % 9 12 2249 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 17 1578
70 % 275 335 14
50 % 606 730 5
40 % 611 735 9
30 % 1033 1175 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.