Sequence Similarity Clusters for the Entities in PDB 1HUO

Entity #1 | Chains: C,T
5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,P
5'-D(P*CP*GP*AP*CP*GP*CP*C)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
DNA POLYMERASE BETA protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5737
95 % 280 322 79
90 % 280 322 83
70 % 280 322 98
50 % 280 322 136
40 % 280 322 152
30 % 397 452 108

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures