Sequence Similarity Clusters for the Entities in PDB 1HUO

Entity #1 | Chains: C,T
5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,P
5'-D(P*CP*GP*AP*CP*GP*CP*C)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
DNA POLYMERASE BETA protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 5249
95 % 280 322 82 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.0
PDBFlex
90 % 280 322 85
70 % 280 322 103
50 % 280 322 142
40 % 280 322 155
30 % 397 452 115

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures