Sequence Similarity Clusters for the Entities in PDB 1HUC

Entity #1 | Chains: A,C
CATHEPSIN B protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16484
95 % 1 3 15309 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 12968
70 % 1 4 12182
50 % 1 4 10858
40 % 1 4 9774
30 % 1 4 8363
Entity #2 | Chains: B,D
CATHEPSIN B protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16485
95 % 1 3 15310 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 3 14994
70 % 1 4 11870
50 % 1 4 10594
40 % 1 4 9552
30 % 1 4 8181

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures