Sequence Similarity Clusters for the Entities in PDB 1HUC

Entity #1 | Chains: A,C
CATHEPSIN B protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16567
95 % 1 3 15462 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 1 4 13584
70 % 1 4 12768
50 % 1 4 11386
40 % 1 4 10326
30 % 1 4 9004
Entity #2 | Chains: B,D
CATHEPSIN B protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15794
95 % 1 3 14778 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 3 14510
70 % 1 4 11840
50 % 1 4 10578
40 % 1 4 9583
30 % 1 4 8349

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures