Sequence Similarity Clusters for the Entities in PDB 1HTM

Entity #1 | Chains: A,C,E
HEMAGGLUTININ HA1 CHAIN protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30043
95 % 1 1 24927
90 % 1 1 24104
70 % 1 1 21932
50 % 1 1 18996
40 % 1 1 16921
30 % 1 1 14527
Entity #2 | Chains: B,D,F
HEMAGGLUTININ HA2 CHAIN protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28708
95 % 1 1 23840 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.0
PDBFlex
90 % 1 1 23063
70 % 1 1 21019
50 % 1 1 18204
40 % 1 1 16223
30 % 1 1 13876

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.