Sequence Similarity Clusters for the Entities in PDB 1HTM

Entity #1 | Chains: A,C,E
HEMAGGLUTININ HA1 CHAIN protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31290
95 % 1 1 25906
90 % 1 1 25024
70 % 1 1 22715
50 % 1 1 19639
40 % 1 1 17475
30 % 1 1 15000
Entity #2 | Chains: B,D,F
HEMAGGLUTININ HA2 CHAIN protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29923
95 % 1 1 24798 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 23960
70 % 1 1 21794
50 % 1 1 18838
40 % 1 1 16769
30 % 1 1 14343

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures