Sequence Similarity Clusters for the Entities in PDB 1HTM

Entity #1 | Chains: A,C,E
HEMAGGLUTININ HA1 CHAIN protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 29500
95 % 1 1 24449
90 % 1 1 23656
70 % 1 1 21615
50 % 1 1 18753
40 % 1 1 16708
30 % 1 1 14346
Entity #2 | Chains: B,D,F
HEMAGGLUTININ HA2 CHAIN protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28198
95 % 1 1 23389 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 22633
70 % 1 1 20694
50 % 1 1 17951
40 % 1 1 16003
30 % 1 1 13689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.