Sequence Similarity Clusters for the Entities in PDB 1HSA

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-B*2705) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 21 2545
95 % 26 34 1608 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 140 204 137
70 % 347 740 6
50 % 353 754 7
40 % 370 806 9
30 % 399 930 12
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 339 666 2
95 % 348 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 351 690 4
70 % 418 944 4
50 % 426 966 3
40 % 426 966 6
30 % 426 966 9
Entity #3 | Chains: C,F
MODEL PEPTIDE SEQUENCE - ARAAAAAAA protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures