Sequence Similarity Clusters for the Entities in PDB 1HSA

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-B*2705) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 19 2436
95 % 26 34 1492 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 137 200 132
70 % 334 705 6
50 % 335 710 6
40 % 356 761 10
30 % 382 881 15
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 310 607 2
95 % 337 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 340 660 4
70 % 404 898 4
50 % 412 920 3
40 % 412 920 8
30 % 412 920 12
Entity #3 | Chains: C,F
MODEL PEPTIDE SEQUENCE - ARAAAAAAA protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.