Sequence Similarity Clusters for the Entities in PDB 1HRV

Entity #1 | Chains: 1
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 26 1727
95 % 21 36 1518 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 21 36 1553
70 % 22 37 1488
50 % 22 37 1546
40 % 142 160 277
30 % 142 160 287
Entity #2 | Chains: 2
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2) protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 28 1578
95 % 20 35 1584 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.0
PDBFlex
90 % 21 36 1559
70 % 22 37 1490
50 % 142 160 315
40 % 142 160 329
30 % 175 195 167
Entity #3 | Chains: 3
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 36 1139
95 % 21 36 1530 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 21 36 1565
70 % 22 37 1492
50 % 151 169 244
40 % 153 171 260
30 % 190 210 149
Entity #4 | Chains: 4
HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 35 1195
95 % 21 36 1556
90 % 21 36 1592
70 % 72 87 576
50 % 107 122 441
40 % 108 123 466
30 % 108 123 462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures