Sequence Similarity Clusters for the Entities in PDB 1HRT

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 1471
95 % 10 17 1985 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 10 17 2032
70 % 10 17 2039
50 % 28 42 845
40 % 28 42 876
30 % 28 42 863
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 22 1175
95 % 11 22 1592 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 11 22 1620
70 % 344 405 45
50 % 344 405 80
40 % 1468 1684 4
30 % 1585 1833 6
Entity #3 | Chains: I
HIRUDIN protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24210
95 % 3 7 10781 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 3 7 10648
70 % 5 10 7117
50 % 5 10 6552
40 % 5 10 6106
30 % 5 10 5463

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.