Sequence Similarity Clusters for the Entities in PDB 1HRT

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 1456
95 % 10 17 1965 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 1.9
PDBFlex
90 % 10 17 2014
70 % 10 17 2023
50 % 28 42 840
40 % 28 42 870
30 % 28 42 857
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 22 1157
95 % 11 22 1571 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 11 22 1597
70 % 344 405 43
50 % 344 405 78
40 % 1466 1682 4
30 % 1583 1831 6
Entity #3 | Chains: I
HIRUDIN protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23826
95 % 3 7 10625 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 3 7 10490
70 % 5 10 6974
50 % 5 10 6434
40 % 5 10 5997
30 % 5 10 5372

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.