Sequence Similarity Clusters for the Entities in PDB 1HRT

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 17 1773
95 % 10 17 2082
90 % 10 17 2135
70 % 10 17 2144
50 % 28 42 886
40 % 28 42 911
30 % 28 42 899
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 22 1429
95 % 11 22 1686
90 % 11 22 1725
70 % 346 409 47
50 % 346 409 85
40 % 1618 1873 4
30 % 1627 1887 7
Entity #3 | Chains: I
HIRUDIN protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 11997
95 % 2 6 11557 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 2 6 11395
70 % 5 10 6943
50 % 5 10 6433
40 % 5 10 5970
30 % 5 10 5239

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures