Sequence Similarity Clusters for the Entities in PDB 1HRT

Entity #1 | Chains: L
THROMBIN (SMALL SUBUNIT) protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 17 1503
95 % 10 17 2017
90 % 10 17 2063
70 % 10 17 2072
50 % 28 42 857
40 % 28 42 887
30 % 28 42 872
Entity #2 | Chains: H
THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 22 1207
95 % 11 22 1615
90 % 11 22 1645
70 % 344 405 46
50 % 344 405 84
40 % 1479 1698 4
30 % 1597 1848 6
Entity #3 | Chains: I
HIRUDIN protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24541
95 % 3 7 10926 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 3 7 10781
70 % 5 10 7210
50 % 5 10 6643
40 % 5 10 6190
30 % 5 10 5535

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures