Sequence Similarity Clusters for the Entities in PDB 1HR8

Entity #1 | Chains: A,C,E,G
MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 3072
95 % 3 4 3823 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 3 4 3859
70 % 3 4 3807
50 % 3 4 3720
40 % 3 4 3576
30 % 3 4 3339
Entity #2 | Chains: B,D,F,H
MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT protein, length: 443 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 4491
95 % 3 4 3844 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 4 3881
70 % 3 4 3827
50 % 3 4 3734
40 % 3 4 3588
30 % 3 4 3348
Entity #3 | Chains: O,P,Q,R
CYTOCHROME C OXIDASE POLYPEPTIDE IV protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24165
95 % 1 1 20610
90 % 1 1 20037
70 % 1 1 18454
50 % 1 1 16060
40 % 1 1 14349
30 % 1 1 12302

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.