Sequence Similarity Clusters for the Entities in PDB 1HR8

Entity #1 | Chains: A,C,E,G
MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 3118
95 % 3 4 3871 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 3 4 3908
70 % 3 4 3873
50 % 3 4 3777
40 % 3 4 3627
30 % 3 4 3388
Entity #2 | Chains: B,D,F,H
MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT protein, length: 443 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 4584
95 % 3 4 3891 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 4 3929
70 % 3 4 3892
50 % 3 4 3791
40 % 3 4 3639
30 % 3 4 3397
Entity #3 | Chains: O,P,Q,R
CYTOCHROME C OXIDASE POLYPEPTIDE IV protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 24603
95 % 1 1 21012
90 % 1 1 20421
70 % 1 1 18753
50 % 1 1 16307
40 % 1 1 14563
30 % 1 1 12486

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.