Sequence Similarity Clusters for the Entities in PDB 1HR8

Entity #1 | Chains: A,C,E,G
MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 3214
95 % 3 4 3965 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 3 4 4005
70 % 3 4 3955
50 % 3 4 3845
40 % 3 4 3692
30 % 3 4 3451
Entity #2 | Chains: B,D,F,H
MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT protein, length: 443 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 4716
95 % 3 4 3986 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 3 4 4026
70 % 3 4 3975
50 % 3 4 3860
40 % 3 4 3705
30 % 3 4 3460
Entity #3 | Chains: O,P,Q,R
CYTOCHROME C OXIDASE POLYPEPTIDE IV protein, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25169
95 % 1 1 21456
90 % 1 1 20839
70 % 1 1 19134
50 % 1 1 16630
40 % 1 1 14842
30 % 1 1 12731

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures