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CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1HR0
Sequence Clusters for the Sequence Entities in PDB 1HR0
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 134
95% 107 255 45
90% 107 255 48
70% 107 255 60
50% 144 363 41
40% 144 363 56
30% 146 399 59
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 252 29
95% 107 254 48
90% 107 254 51
70% 107 254 63
50% 150 369 34
40% 150 369 48
30% 150 374 67
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 255 27
95% 107 255 44
90% 107 255 47
70% 107 255 59
50% 144 363 42
40% 148 403 39
30% 148 403 53
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 224 37
95% 107 262 36
90% 107 262 38
70% 144 375 24
50% 144 375 33
40% 144 375 47
30% 144 375 71
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 256 24
95% 107 256 42
90% 107 256 45
70% 107 256 57
50% 144 365 39
40% 144 365 53
30% 146 401 57
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 254 28
95% 107 254 49
90% 107 254 52
70% 107 254 64
50% 107 254 99
40% 107 254 124
30% 107 254 144
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 258 21
95% 111 263 35
90% 111 263 37
70% 111 263 48
50% 151 376 32
40% 151 376 45
30% 151 376 69
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 250 31
95% 107 255 46
90% 107 255 49
70% 107 255 61
50% 107 255 97
40% 107 255 122
30% 144 363 78
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 92 219
95% 106 249 51
90% 107 253 53
70% 107 253 65
50% 107 253 100
40% 107 253 126
30% 107 253 146
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 49 463
95% 101 221 64
90% 101 221 68
70% 101 221 81
50% 101 221 116
40% 101 221 144
30% 101 221 166
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 223 38
95% 101 223 63
90% 101 223 67
70% 101 223 80
50% 145 366 38
40% 145 366 52
30% 145 366 75
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 61 359
95% 107 254 47
90% 107 254 50
70% 107 254 62
50% 107 254 98
40% 107 254 123
30% 107 254 143
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 238 34
95% 107 238 55
90% 107 238 59
70% 107 238 71
50% 107 238 110
40% 107 238 133
30% 107 238 153
Entity #23: Chains: W - TRANSLATION INITIATION FACTOR protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 36127
95% 1 2 27240
90% 1 2 26206
70% 1 2 23642
50% 2 4 9393
40% 2 4 8568
30% 2 4 7537
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 255 25
95% 107 256 39
90% 107 256 43
70% 107 256 55
50% 107 256 96
40% 144 363 55
30% 144 363 77
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 219 39
95% 100 219 66
90% 100 219 70
70% 100 219 83
50% 115 282 81
40% 115 282 101
30% 115 282 123
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 6535
95% 107 256 40
90% 107 256 44
70% 107 256 56
50% 144 363 40
40% 144 364 54
30% 144 364 76
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 255 26
95% 107 255 43
90% 107 255 46
70% 107 255 58
50% 145 367 37
40% 145 367 51
30% 145 369 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 260 18
95% 115 266 34
90% 115 266 36
70% 115 266 47
50% 115 266 88
40% 115 266 112
30% 139 313 95
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 259 20
95% 108 260 37
90% 108 260 39
70% 108 260 51
50% 132 308 57
40% 132 309 74
30% 132 309 97
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 255 23
95% 107 255 41
90% 108 259 40
70% 108 259 52
50% 147 369 36
40% 148 371 49
30% 151 408 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.