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CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1HR0
Sequence Clusters for the Sequence Entities in PDB 1HR0
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 90 166
95% 108 220 47
90% 108 220 51
70% 108 220 61
50% 127 300 43
40% 127 300 52
30% 144 355 48
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 218 36
95% 108 219 50
90% 108 219 54
70% 108 219 65
50% 133 306 31
40% 133 306 42
30% 150 359 42
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 220 34
95% 108 220 46
90% 108 220 50
70% 108 220 60
50% 127 300 42
40% 146 360 31
30% 146 361 41
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 183 46
95% 108 227 27
90% 108 227 32
70% 127 311 21
50% 127 312 30
40% 127 312 41
30% 127 312 56
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 221 32
95% 108 221 44
90% 108 221 48
70% 108 221 58
50% 130 305 38
40% 130 305 50
30% 147 360 47
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 219 35
95% 108 219 51
90% 108 219 55
70% 108 220 63
50% 108 220 92
40% 108 220 113
30% 108 220 126
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 223 28
95% 112 228 25
90% 112 228 29
70% 112 228 41
50% 134 313 28
40% 134 314 39
30% 134 314 55
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 215 37
95% 108 220 48
90% 108 220 52
70% 108 220 62
50% 108 220 91
40% 108 221 112
30% 130 303 69
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 80 223
95% 107 214 56
90% 108 218 57
70% 108 218 67
50% 108 218 94
40% 108 218 116
30% 108 218 128
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 49 517
95% 102 194 64
90% 102 194 66
70% 102 194 78
50% 102 194 111
40% 102 194 129
30% 102 194 148
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 223 27
95% 109 223 40
90% 109 223 45
70% 109 223 55
50% 128 303 35
40% 128 303 47
30% 128 303 65
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 49 367
95% 108 219 49
90% 108 219 53
70% 108 219 64
50% 108 219 93
40% 108 219 114
30% 108 219 127
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 210 39
95% 108 210 59
90% 108 210 62
70% 108 210 72
50% 108 210 98
40% 108 210 120
30% 108 210 133
Entity #23: Chains: W - TRANSLATION INITIATION FACTOR protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 38853
95% 1 2 29181
90% 1 2 28020
70% 1 2 25175
50% 2 5 8970
40% 2 5 8173
30% 2 5 7184
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 220 30
95% 108 221 41
90% 108 221 46
70% 108 221 56
50% 127 299 41
40% 127 300 51
30% 127 300 68
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 193 45
95% 101 193 65
90% 101 193 67
70% 101 193 79
50% 106 236 78
40% 106 236 99
30% 106 236 119
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 7119
95% 108 221 42
90% 108 221 47
70% 108 221 57
50% 127 300 39
40% 127 301 49
30% 127 301 67
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 220 33
95% 108 220 45
90% 108 220 49
70% 108 220 59
50% 128 304 34
40% 128 304 46
30% 128 306 64
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 225 24
95% 116 231 23
90% 116 231 28
70% 116 231 39
50% 116 231 82
40% 116 231 104
30% 132 270 77
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 224 26
95% 109 225 38
90% 109 225 42
70% 109 225 52
50% 128 268 50
40% 128 269 60
30% 128 269 80
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 220 31
95% 108 220 43
90% 109 224 43
70% 109 224 53
50% 130 306 33
40% 131 308 43
30% 149 364 40
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.