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CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1HR0
Sequence Clusters for the Sequence Entities in PDB 1HR0
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 155
95% 116 268 44
90% 116 268 46
70% 116 268 56
50% 155 378 40
40% 155 378 54
30% 189 450 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 265 27
95% 116 267 47
90% 116 267 49
70% 116 267 59
50% 161 384 34
40% 161 384 46
30% 161 389 65
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 268 25
95% 116 268 43
90% 116 268 45
70% 116 268 55
50% 155 378 41
40% 191 454 34
30% 191 454 44
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 237 35
95% 116 275 35
90% 116 275 37
70% 155 390 24
50% 155 390 33
40% 155 390 45
30% 155 390 68
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 269 22
95% 116 269 41
90% 116 269 43
70% 116 269 53
50% 155 380 38
40% 155 380 51
30% 189 452 47
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 267 26
95% 116 267 48
90% 116 267 50
70% 116 267 60
50% 116 267 94
40% 116 267 119
30% 116 267 141
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 271 20
95% 120 276 32
90% 120 276 34
70% 120 276 47
50% 162 391 32
40% 162 391 43
30% 162 391 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 263 28
95% 116 268 45
90% 116 268 47
70% 116 268 57
50% 116 268 92
40% 116 268 117
30% 155 378 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 92 221
95% 115 262 49
90% 116 266 51
70% 116 266 61
50% 116 266 95
40% 116 266 120
30% 116 266 142
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 49 486
95% 110 232 61
90% 110 232 64
70% 110 232 78
50% 110 232 116
40% 110 232 139
30% 110 232 161
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 234 37
95% 110 234 59
90% 110 234 63
70% 110 234 77
50% 156 381 37
40% 156 381 49
30% 156 381 72
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 61 363
95% 116 267 46
90% 116 267 48
70% 116 267 58
50% 116 267 93
40% 116 267 118
30% 116 267 140
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 249 34
95% 116 249 53
90% 116 249 55
70% 116 249 68
50% 116 249 105
40% 116 249 132
30% 116 249 151
Entity #23: Chains: W - TRANSLATION INITIATION FACTOR protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 36821
95% 1 2 27750
90% 1 2 26681
70% 1 2 24065
50% 2 4 9551
40% 2 4 8708
30% 2 4 7649
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 268 23
95% 116 269 38
90% 116 269 41
70% 116 269 51
50% 116 269 91
40% 155 378 53
30% 155 378 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 230 38
95% 109 230 63
90% 109 230 66
70% 109 230 80
50% 124 293 74
40% 124 293 99
30% 124 293 119
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 6661
95% 116 269 39
90% 116 269 42
70% 116 269 52
50% 155 378 39
40% 155 379 52
30% 155 379 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 268 24
95% 116 268 42
90% 116 268 44
70% 116 268 54
50% 156 382 36
40% 156 382 48
30% 156 384 71
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 273 18
95% 124 279 29
90% 124 279 30
70% 124 279 44
50% 124 279 86
40% 124 279 108
30% 150 328 94
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 272 19
95% 117 273 36
90% 117 273 38
70% 117 273 49
50% 143 323 56
40% 143 324 74
30% 143 324 96
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 268 21
95% 116 268 40
90% 117 272 39
70% 117 272 50
50% 158 384 35
40% 159 386 47
30% 194 459 43
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.