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CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1HR0
Sequence Clusters for the Sequence Entities in PDB 1HR0
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 90 140
95% 94 196 43
90% 94 196 45
70% 94 196 56
50% 112 270 41
40% 112 270 54
30% 129 321 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 194 28
95% 94 195 46
90% 94 195 48
70% 94 195 59
50% 118 276 35
40% 118 276 45
30% 135 326 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 196 26
95% 94 196 42
90% 94 196 44
70% 94 196 55
50% 112 270 42
40% 131 325 36
30% 131 325 47
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 165 35
95% 94 203 31
90% 94 203 33
70% 112 282 24
50% 112 282 34
40% 112 282 44
30% 112 282 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 197 23
95% 94 197 38
90% 94 197 40
70% 94 197 52
50% 115 275 39
40% 115 275 51
30% 132 326 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 195 27
95% 94 195 47
90% 94 195 49
70% 94 195 60
50% 94 195 92
40% 94 195 116
30% 94 195 139
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 199 19
95% 98 204 30
90% 98 204 32
70% 98 204 44
50% 119 283 33
40% 119 283 43
30% 119 283 68
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 191 29
95% 94 196 44
90% 94 196 46
70% 94 196 57
50% 94 196 89
40% 94 196 114
30% 115 273 77
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 80 221
95% 93 190 49
90% 94 194 50
70% 94 194 61
50% 94 194 93
40% 94 194 117
30% 94 194 141
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 49 496
95% 88 172 70
90% 88 172 74
70% 88 172 88
50% 88 172 125
40% 88 172 146
30% 88 172 165
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 174 47
95% 88 174 69
90% 88 174 73
70% 88 174 87
50% 113 273 38
40% 113 273 49
30% 113 273 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 49 354
95% 94 195 45
90% 94 195 47
70% 94 195 58
50% 94 195 91
40% 94 195 115
30% 94 195 138
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 186 32
95% 94 186 51
90% 94 186 54
70% 94 186 66
50% 94 186 110
40% 94 186 133
30% 94 186 151
Entity #23: Chains: W - TRANSLATION INITIATION FACTOR protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 37640
95% 1 2 28291
90% 1 2 27187
70% 1 2 24505
50% 2 4 9748
40% 2 4 8888
30% 2 4 7792
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 196 24
95% 94 197 35
90% 94 197 38
70% 94 197 50
50% 94 197 88
40% 112 270 53
30% 112 270 76
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 171 48
95% 87 171 72
90% 87 171 76
70% 87 171 90
50% 92 210 76
40% 92 210 101
30% 92 210 121
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 6870
95% 94 197 36
90% 94 197 39
70% 94 197 51
50% 112 270 40
40% 112 271 52
30% 112 271 75
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 196 25
95% 94 196 40
90% 94 196 42
70% 94 196 54
50% 113 274 37
40% 113 274 48
30% 113 276 71
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 201 17
95% 102 207 29
90% 102 207 31
70% 102 207 42
50% 102 207 81
40% 102 207 108
30% 117 244 90
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 200 18
95% 95 201 33
90% 95 201 35
70% 95 201 46
50% 113 242 55
40% 113 243 71
30% 113 243 95
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 196 22
95% 94 196 37
90% 95 200 36
70% 95 200 47
50% 115 276 36
40% 116 278 46
30% 134 330 45
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.