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CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Sequence Clustering and Redundancy Reduction Results
1HR0
Sequence Clusters for the Sequence Entities in PDB 1HR0
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 89 144
95% 90 191 44
90% 90 191 46
70% 90 191 57
50% 108 265 40
40% 108 265 55
30% 125 314 52
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 189 28
95% 90 190 47
90% 90 190 50
70% 90 190 60
50% 114 271 34
40% 114 271 46
30% 114 276 66
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 191 26
95% 90 191 43
90% 90 191 45
70% 90 191 56
50% 108 265 41
40% 127 318 35
30% 127 318 45
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 160 35
95% 90 198 34
90% 90 198 36
70% 108 277 24
50% 108 277 33
40% 108 277 45
30% 108 277 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 192 23
95% 90 192 40
90% 90 192 43
70% 90 192 54
50% 111 270 38
40% 111 270 51
30% 128 319 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 190 27
95% 90 190 48
90% 90 190 51
70% 90 190 61
50% 90 190 94
40% 90 190 119
30% 90 190 142
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 194 21
95% 94 199 33
90% 94 199 35
70% 94 199 47
50% 115 278 32
40% 115 278 43
30% 115 278 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 186 29
95% 90 191 45
90% 90 191 48
70% 90 191 58
50% 90 191 92
40% 90 191 117
30% 111 268 78
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 79 223
95% 89 185 49
90% 90 189 52
70% 90 189 62
50% 90 189 95
40% 90 189 120
30% 90 189 143
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 49 494
95% 84 168 61
90% 84 168 64
70% 84 168 80
50% 84 168 117
40% 84 168 140
30% 84 168 163
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 170 37
95% 84 170 59
90% 84 170 63
70% 84 170 78
50% 109 268 37
40% 109 268 50
30% 109 268 74
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 48 363
95% 90 190 46
90% 90 190 49
70% 90 190 59
50% 90 190 93
40% 90 190 118
30% 90 190 141
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 181 34
95% 90 181 53
90% 90 181 55
70% 90 181 69
50% 90 181 105
40% 90 181 132
30% 90 181 151
Entity #23: Chains: W - TRANSLATION INITIATION FACTOR protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 37307
95% 1 2 28079
90% 1 2 26992
70% 1 2 24335
50% 2 4 9670
40% 2 4 8816
30% 2 4 7736
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 191 24
95% 90 192 37
90% 90 192 41
70% 90 192 52
50% 90 192 91
40% 108 265 54
30% 108 265 77
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 167 38
95% 83 167 63
90% 83 167 66
70% 83 167 82
50% 88 206 77
40% 88 206 101
30% 88 206 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 6767
95% 90 192 38
90% 90 192 42
70% 90 192 53
50% 108 265 39
40% 108 266 52
30% 108 266 76
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 191 25
95% 90 191 42
90% 90 191 44
70% 90 191 55
50% 109 269 36
40% 109 269 49
30% 109 271 73
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 196 19
95% 98 202 30
90% 98 202 31
70% 98 202 45
50% 98 202 84
40% 98 202 108
30% 113 239 93
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 195 20
95% 91 196 36
90% 91 196 38
70% 91 196 49
50% 109 237 56
40% 109 238 74
30% 109 238 96
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 191 22
95% 90 191 39
90% 91 195 39
70% 91 195 50
50% 111 271 35
40% 112 273 47
30% 130 323 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.