Sequence Similarity Clusters for the Entities in PDB 1HR0

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 91 211
95 % 138 269 51
90 % 138 269 54
70 % 138 269 65
50 % 165 392 36
40 % 165 392 47
30 % 185 497 35
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 267 38
95 % 138 268 54
90 % 138 268 57
70 % 138 268 69
50 % 171 399 26
40 % 171 399 37
30 % 191 498 32
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 269 36
95 % 138 269 50
90 % 138 269 53
70 % 138 269 64
50 % 165 392 35
40 % 187 497 19
30 % 187 497 33
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 217 50
95 % 138 276 40
90 % 138 276 44
70 % 165 405 22
50 % 165 410 25
40 % 165 410 35
30 % 165 410 55
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 270 34
95 % 138 270 47
90 % 138 270 51
70 % 138 270 61
50 % 168 397 33
40 % 168 397 46
30 % 188 498 36
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 268 37
95 % 138 268 55
90 % 138 268 58
70 % 138 270 62
50 % 138 270 90
40 % 138 270 112
30 % 138 270 123
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 272 30
95 % 142 277 39
90 % 142 277 43
70 % 142 277 55
50 % 172 405 27
40 % 172 408 36
30 % 172 408 56
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 264 39
95 % 138 269 52
90 % 138 269 55
70 % 138 269 66
50 % 138 271 89
40 % 138 271 110
30 % 168 393 64
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 87 246
95 % 137 263 56
90 % 138 267 59
70 % 138 267 70
50 % 138 267 94
40 % 138 267 115
30 % 138 267 127
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 51 692
95 % 124 234 64
90 % 124 234 68
70 % 124 234 80
50 % 124 234 108
40 % 124 234 133
30 % 124 234 142
Entity #2 | Chains: X
FRAGMENT OF MESSENGER RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 272 29
95 % 139 272 43
90 % 139 272 48
70 % 139 272 58
50 % 166 397 30
40 % 166 400 41
30 % 166 400 58
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 51 487
95 % 138 268 53
90 % 138 268 56
70 % 138 268 68
50 % 138 268 92
40 % 138 268 113
30 % 138 268 124
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 259 43
95 % 138 259 59
90 % 138 259 63
70 % 138 259 75
50 % 138 259 97
40 % 138 259 120
30 % 138 259 130
Entity #23 | Chains: W
TRANSLATION INITIATION FACTOR protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 5165
95 % 1 12 5784
90 % 1 12 5780
70 % 1 12 5648
50 % 3 18 2991
40 % 3 18 2926
30 % 3 18 2739
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 269 32
95 % 138 270 44
90 % 138 270 49
70 % 138 270 59
50 % 165 391 34
40 % 165 394 45
30 % 165 394 62
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 233 47
95 % 123 233 65
90 % 123 233 69
70 % 123 233 81
50 % 129 305 84
40 % 129 305 102
30 % 129 305 113
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 8636
95 % 138 270 45
90 % 138 270 50
70 % 138 270 60
50 % 165 393 32
40 % 165 396 43
30 % 165 396 61
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 269 35
95 % 138 269 49
90 % 138 269 52
70 % 138 269 63
50 % 166 397 31
40 % 166 397 44
30 % 166 399 59
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 274 27
95 % 146 280 36
90 % 146 280 41
70 % 146 280 52
50 % 146 280 87
40 % 146 280 106
30 % 169 334 90
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 273 28
95 % 139 274 41
90 % 139 274 45
70 % 139 274 56
50 % 165 338 71
40 % 165 341 79
30 % 165 341 93
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 269 33
95 % 138 269 46
90 % 139 273 46
70 % 139 273 57
50 % 168 398 29
40 % 169 402 38
30 % 191 510 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.