Sequence Similarity Clusters for the Entities in PDB 1HR0

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 91 220
95 % 140 271 50
90 % 140 271 55
70 % 140 271 65
50 % 167 411 35
40 % 167 411 48
30 % 188 526 34
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 269 39
95 % 140 270 53
90 % 140 270 58
70 % 140 270 68
50 % 173 421 26
40 % 173 421 38
30 % 194 528 32
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 271 35
95 % 140 271 49
90 % 140 271 54
70 % 140 271 64
50 % 167 415 32
40 % 190 537 19
30 % 190 537 31
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 217 51
95 % 140 278 39
90 % 140 278 44
70 % 167 422 19
50 % 167 432 24
40 % 167 432 35
30 % 167 432 55
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 272 33
95 % 140 272 46
90 % 140 272 51
70 % 140 272 62
50 % 170 419 31
40 % 170 419 43
30 % 191 527 36
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 270 36
95 % 140 270 54
90 % 140 270 59
70 % 140 279 54
50 % 140 279 90
40 % 140 279 113
30 % 140 279 123
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 274 30
95 % 144 279 38
90 % 144 279 43
70 % 144 279 53
50 % 174 428 25
40 % 174 433 34
30 % 174 433 54
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 266 41
95 % 140 271 51
90 % 140 271 56
70 % 140 271 66
50 % 140 278 91
40 % 140 278 114
30 % 170 413 63
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 87 258
95 % 139 265 56
90 % 140 269 60
70 % 140 269 69
50 % 140 269 94
40 % 140 269 117
30 % 140 269 128
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 51 719
95 % 126 236 65
90 % 126 236 69
70 % 126 236 81
50 % 126 236 111
40 % 126 236 135
30 % 126 236 144
Entity #2 | Chains: X
FRAGMENT OF MESSENGER RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 274 29
95 % 141 274 42
90 % 141 274 48
70 % 141 274 58
50 % 168 421 28
40 % 168 424 40
30 % 168 424 57
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 51 524
95 % 140 270 52
90 % 140 270 57
70 % 140 270 67
50 % 140 270 93
40 % 140 270 116
30 % 140 270 127
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 261 43
95 % 140 261 59
90 % 140 261 63
70 % 140 261 74
50 % 140 261 98
40 % 140 261 121
30 % 140 261 133
Entity #23 | Chains: W
TRANSLATION INITIATION FACTOR protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 12 5416
95 % 1 12 6059
90 % 1 12 6048
70 % 1 12 5908
50 % 3 18 3104
40 % 3 18 3029
30 % 3 18 2839
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 271 31
95 % 140 272 43
90 % 140 272 49
70 % 140 272 59
50 % 167 409 36
40 % 167 414 45
30 % 167 414 62
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 235 48
95 % 125 235 66
90 % 125 235 70
70 % 125 235 82
50 % 131 309 84
40 % 131 309 103
30 % 131 309 116
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 9009
95 % 140 272 44
90 % 140 272 50
70 % 140 272 60
50 % 167 416 29
40 % 167 421 41
30 % 167 421 58
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 271 34
95 % 140 271 48
90 % 140 271 53
70 % 140 271 63
50 % 168 417 30
40 % 168 417 42
30 % 168 419 60
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 276 27
95 % 148 282 37
90 % 148 282 42
70 % 148 282 51
50 % 148 282 88
40 % 148 282 110
30 % 171 355 95
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 275 28
95 % 141 276 41
90 % 141 276 46
70 % 141 276 56
50 % 167 356 66
40 % 167 361 84
30 % 167 361 96
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 271 32
95 % 140 271 45
90 % 141 275 47
70 % 141 275 57
50 % 170 421 27
40 % 171 427 37
30 % 194 542 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.