Sequence Similarity Clusters for the Entities in PDB 1HQR

Entity #1 | Chains: A
HLA-DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 71 232
95 % 69 78 297 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 83 94 237
70 % 83 94 270
50 % 131 146 178
40 % 131 146 194
30 % 273 304 100
Entity #2 | Chains: B
HLA-DR BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7115
95 % 2 4 7668 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 66 73 344
70 % 122 137 163
50 % 131 146 177
40 % 131 146 193
30 % 274 304 100
Entity #3 | Chains: C
MYELIN BASIC PROTEIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
STREPTOCOCCAL PYROGENIC EXOTOXIN C protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12692
95 % 2 3 12194 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 2 3 11996
70 % 2 3 11277
50 % 2 3 10093
40 % 4 5 4926
30 % 82 88 318

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.