Sequence Similarity Clusters for the Entities in PDB 1HQQ

Entity #1 | Chains: A,B,C,D
STREPTAVIDIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 96 113
95 % 102 144 68 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.3
PDBFlex
90 % 105 147 71
70 % 105 147 83
50 % 105 148 112
40 % 105 148 135
30 % 130 202 91
Entity #2 | Chains: E,F,G,H
MP-2 protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.