Sequence Similarity Clusters for the Entities in PDB 1HQQ

Entity #1 | Chains: A,B,C,D
STREPTAVIDIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 122 98
95 % 102 144 77 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.3
PDBFlex
90 % 105 147 77
70 % 105 147 96
50 % 105 148 126
40 % 122 194 101
30 % 130 203 109
Entity #2 | Chains: E,F,G,H
MP-2 protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures