1HQM

CRYSTAL STRUCTURE OF THERMUS AQUATICUS CORE RNA POLYMERASE-INCLUDES COMPLETE STRUCTURE WITH SIDE-CHAINS (EXCEPT FOR DISORDERED REGIONS)-FURTHER REFINED FROM ORIGINAL DEPOSITION-CONTAINS ADDITIONAL SEQUENCE INFORMATION


Sequence Similarity Clusters for the Entities in PDB 1HQM

Entity #1 | Chains: A,B
DNA-DIRECTED RNA POLYMERASE protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 34008
95 % 5 12 1399
90 % 5 12 1424
70 % 39 52 217
50 % 39 52 249
40 % 49 79 171
30 % 50 80 187
Entity #2 | Chains: C
DNA-DIRECTED RNA POLYMERASE protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47001
95 % 5 12 3166
90 % 39 52 474
70 % 39 52 510
50 % 40 53 560
40 % 40 53 605
30 % 40 53 601
Entity #3 | Chains: D
DNA-DIRECTED RNA POLYMERASE protein, length: 1265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46962
95 % 2 2 23696
90 % 2 2 22938
70 % 2 2 20994
50 % 2 2 18266
40 % 2 2 16285
30 % 2 2 14000
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 2872
95 % 5 11 3606
90 % 39 51 491
70 % 39 51 532
50 % 39 51 585
40 % 39 51 616
30 % 39 51 619

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.