1HQM

CRYSTAL STRUCTURE OF THERMUS AQUATICUS CORE RNA POLYMERASE-INCLUDES COMPLETE STRUCTURE WITH SIDE-CHAINS (EXCEPT FOR DISORDERED REGIONS)-FURTHER REFINED FROM ORIGINAL DEPOSITION-CONTAINS ADDITIONAL SEQUENCE INFORMATION


Sequence Similarity Clusters for the Entities in PDB 1HQM

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35265
95 % 6 13 1370 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 6 13 1389
70 % 44 57 200
50 % 44 57 240
40 % 56 91 154
30 % 57 92 167
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48697
95 % 6 13 3156
90 % 44 57 448
70 % 44 57 483
50 % 57 71 480
40 % 57 71 514
30 % 57 71 514
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1265 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48658
95 % 2 2 24551 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 2 23753
70 % 2 2 21707
50 % 2 2 18843
40 % 2 2 16796
30 % 2 2 14434
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 12 2859
95 % 6 12 3554 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 44 56 464
70 % 44 56 502
50 % 44 56 561
40 % 44 56 597
30 % 44 56 591

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.