Sequence Similarity Clusters for the Entities in PDB 1HQE

Entity #1 | Chains: A
POL POLYPROTEIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 107 254
95 % 165 258 115 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 165 258 119
70 % 165 258 133
50 % 166 259 161
40 % 166 260 172
30 % 166 260 190
Entity #2 | Chains: B
POL POLYPROTEIN protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 118 219
95 % 160 252 120 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 160 252 123
70 % 160 252 140
50 % 161 254 169
40 % 161 254 182
30 % 161 254 201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4G1Q 2 B p51 RT P51, UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
2 4ICL 2 B p51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
3 4KFB 2 B P51 RT p51 RT 11676
4 2ZD1 2 B p51 RT P51 11676
5 4IG3 2 B P51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
6 4ID5 2 B P51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
7 3DLK 2 B p51 RT p51 (UNP residues 605 to 1027) 11676 2.7.7.7 | Details 3.1.26.4 | Details
8 4IFV 2 B Gag-Pol polyprotein P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
9 4IDK 2 B p51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
10 4IFY 2 B p51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
11 5CYM 2 B HIV-1 reverse transcriptase, p51 subunit 11676 2.7.7.49 | Details
12 4KO0 2 B HIV-1 reverse transcriptase, p51 subunit p51 11676 2.7.7.49 | Details
13 6ELI 2 B Gag-Pol polyprotein 11676
14 5CYQ 2 B HIV-1 reverse transcriptase, p51 subunit 11676 2.7.7.49 | Details
15 3BGR 2 B p51 RT P51 11676
16 2YKN 2 B REVERSE TRANSCRIPTASE/RIBONUCLEASE H RESIDUES 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
17 4DG1 2 B Reverse Transcriptase P51 subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details
18 5VQZ 2 B p51 RT 11676
19 4I2P 2 B Gag-Pol polyprotein p51 (UNP Residues 600-1077) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
20 5TXO 2 B, D HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details
21 5VQY 2 B p51 RT 11676
22 4IG0 2 B P51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
23 5TXN 2 B, D HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details
24 4PQU 2 B, D HIV-1 Reverse Transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
25 5VQX 2 B p51 RT p51 11676
26 5TXM 2 B, D HIV-1 Reverse Transcriptase P51 subunit 11676 2.7.7.7 | Details
27 5VQS 2 B p51 RT 11676
28 2BE2 2 B REVERSE TRANSCRIPTASE P51 SUBUNIT residues 599-1028 11676 2.7.7.49 | Details
29 3ISN 2 D p51 RT 11676
30 5TXP 2 B, D HIV-1 REVERSE TRANSCRIPTASE P61 SUBUNIT 11676 2.7.7.7 | Details
31 5VQW 2 B p51 RT 11676
32 5VQQ 2 B p51 RT 11676
33 5VQR 2 B p51 RT 11676
34 5VQT 2 B p51 RT 11676
35 4WE1 2 B Gag-Pol polyprotein UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
36 5VQV 2 B p51 RT p51 11676
37 5VQU 2 B p51 RT p51 11676
38 4I2Q 2 B Gag-Pol polyprotein p51 (UNP Residues 600-1077) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
39 5TUQ 2 B HIV-1 REVERSE TRANSCRIPTASE p51 domain residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
40 1EET 2 B HIV-1 REVERSE TRANSCRIPTASE RESIDUES 1001-1427 11676 2.7.7.49 | Details
41 2B6A 2 B Reverse transcriptase p51 subunit RESIDUES 599-1028 11676 2.7.7.49 | Details
42 4R5P 2 B, D HIV-1 reverse transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
43 1IKX 2 B POL POLYPROTEIN 11676 2.7.7.49 | Details
44 4RW6 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
45 3ITH 2 B, D p51 RT 11676
46 3IS9 2 B Reverse transcriptase 11676 2.7.7.49 | Details 2.7.7.7 | Details
47 4RW4 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
48 5TER 2 B HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT UNP residues 600-1027 11676 2.7.7 | Details 2.7.7.49 | Details 2.7.7.7 | Details 3.1 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
49 3QLH 2 B reverse transcriptase/ribonuclease H P51 (UNP residues 605-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details
50 3QO9 2 B p51 RT 11676 2.7.7.7 | Details 3.1.26.4 | Details
51 3V6D 2 B, D HIV-1 REVERSE TRANSCRIPTASE P51 subunit UNP Residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
52 5C25 2 B HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
53 1S9E 2 B POL polyprotein [Contains: Reverse transcriptase] P51 SUBUNIT 11676 2.7.7.49 | Details
54 4O4G 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
55 4LSL 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
56 3V4I 2 B, D HIV-1 Reverse Transcriptase P51 subunit UNP Residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
57 2YKM 2 B REVERSE TRANSCRIPTASE/RIBONUCLEASE H RESIDUES 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
58 1HQU 2 B POL POLYPROTEIN P51 SUBUNIT 11676 2.7.7.49 | Details
59 1DLO 2 B HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
60 5TW3 2 B HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
61 3IRX 2 B Reverse transcriptase 11676 2.7.7.49 | Details 2.7.7.7 | Details
62 1HQE 2 B POL POLYPROTEIN P51 SUBUNIT 11676 2.7.7.49 | Details
63 1IKY 2 B POL POLYPROTEIN 11676 2.7.7.49 | Details
64 3IG1 2 B HIV-1 Reverse Transcriptase p51 subunit p51 subunit, residues 600-1027 11676 2.7.7.49 | Details
65 1R0A 4 B Reverse transcriptase p51 HIV-1 RT 11676 2.7.7.49 | Details
66 4H4M 2 B Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT HIV-1 Reverse Transcriptase, p55 Subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
67 3KLI 2 B p51 RT 11676
68 2VG5 2 B P51 RT GAG-POL POLYPROTEIN P51 SUBUNIT, RESIDUES 600-1027 11676
69 1IKW 2 B POL POLYPROTEIN 11676 2.7.7.49 | Details
70 1S9G 2 B POL polyprotein [Contains: Reverse transcriptase] P51 SUBUNIT 11676 2.7.7.49 | Details
71 4PUO 2 B, D HIV-1 Reverse Transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
72 4H4O 2 B Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT HIV-1 Reverse Transcriptase, p51 Subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
73 4MFB 2 B HIV-1 reverse transcriptase, p51 subunit HIV-1 reverse transcriptase, p51 subunit (chain B) 11676 2.7.7.49 | Details
74 4O44 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
75 4PWD 2 B, D HIV-1 Reverse Transcriptase, P51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
76 1IKV 2 B POL POLYPROTEIN 11676 2.7.7.49 | Details
77 2ZE2 2 B p51 RT P51 11676
78 4RW8 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
79 4RW9 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
80 4KKO 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
81 4RW7 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
82 1S6P 2 B POL polyprotein [Contains: Reverse transcriptase] P51 SUBUNIT 11676 2.7.7.49 | Details
83 3V81 2 B, D HIV-1 Reverse Transcriptase P51 subunit UNP Residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
84 5UV5 2 B, D p51 RT p51 domain residues 600-1027 11676
85 5HBM 2 B p51 RT p51 domain, residues 604-1027 11676
86 2B5J 2 B Reverse transcriptase P51 SUBUNIT RESIDUES 599-1028 11676 2.7.7.49 | Details
87 2VG7 2 B P51 RT GAG-POL POLYPROTEIN P51 SUBUNIT, RESIDUES 600-1027 11676
88 5TEP 2 B HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT UNP residues 600-1027 11676 2.7.7 | Details 2.7.7.49 | Details 2.7.7.7 | Details 3.1 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
89 1SV5 2 B Reverse Transcriptase P51 SUBUNIT 11676 2.7.7.49 | Details
90 2BAN 2 B Reverse transcriptase P51 subunit RESIDUES 599-1028 11676 2.7.7.49 | Details
91 5J1E 2 B, D HIV-1 REVERSE TRANSCRIPTASE P51 DOMAIN p51 domain, residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
92 1S6Q 2 B POL polyprotein [Contains: Reverse transcriptase] P51 SUBUNIT 11676 2.7.7.49 | Details
93 1N6Q 4 B Reverse Transcriptase p51 11676 2.7.7.49 | Details
94 2HMI 4 B HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
95 3KLH 2 B p51 RT 11676
96 1HNV 2 B HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) 11676 2.7.7.49 | Details
97 2VG6 2 B P51 RT GAG-POL POLYPROTEIN P51 SUBUNIT, RESIDUES 600-1027 11676
98 2I5J 2 B Reverse transcriptase/ribonuclease H P51 subunit residues 599-1027 11676 2.7.7.49 | Details
99 3JSM 4 B HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details
100 1T05 4 B POL polyprotein HIV-1 reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
101 1HPZ 2 B POL POLYPROTEIN P51 SUBUNIT 11676 2.7.7.49 | Details
102 3HVT 2 B HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) 11676 2.7.7.49 | Details
103 1TVR 2 B REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
104 1SUQ 2 B REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details
105 4LSN 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
106 1N5Y 4 B REVERSE TRANSCRIPTASE p51 11676 2.7.7.49 | Details
107 1T03 4 B POL polyprotein Reverse transcriptase, p51 subunit 11676 2.7.7.49 | Details
108 4Q0B 2 B, D HIV-1 reverse transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
109 1BQM 2 B REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
110 1HYS 4 B HIV-1 REVERSE TRANSCRIPTASE P51 11676 2.7.7.49 | Details
111 1BQN 2 B REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
112 3JYT 2 B HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details
113 5C42 2 B HIV-1 Reverse Transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
114 3KLE 2 B, F, J, N p51 RT 11676
115 1J5O 4 B Reverse transcriptase 11676 2.7.7.49 | Details
116 1QE1 2 B REVERSE TRANSCRIPTASE, SUBUNIT P51 SUBUNIT B (P51), RESIDUES 168-594 11676 2.7.7.49 | Details
117 3KLG 2 B, F p51 RT 11676
118 6B19 2 B reverse transcriptase p51 subunit UNP residues 600-1039 11676 2.7.7.49 | Details