Sequence Similarity Clusters for the Entities in PDB 1HQE

Entity #1 | Chains: A
POL POLYPROTEIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 107 264
95 % 185 278 108 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 185 278 113
70 % 185 278 128
50 % 186 279 153
40 % 186 280 162
30 % 186 280 181
Entity #2 | Chains: B
POL POLYPROTEIN protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 74 130 210
95 % 180 272 112 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 180 272 117
70 % 180 272 131
50 % 181 274 159
40 % 181 274 170
30 % 181 274 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4G1Q 2 B p51 RT P51, UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
2 4ICL 2 B p51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
3 6AOC 2 B, D p51 RT p51 domain residues 168-595 11676
4 4KFB 2 B P51 RT p51 RT 11676
5 6C0O 2 B Reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
6 6C0J 2 B Reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
7 2ZD1 2 B p51 RT P51 11676
8 4IG3 2 B P51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
9 6C0K 2 B Reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
10 6C0L 2 B Reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
11 4ID5 2 B P51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
12 6DUF 2 B p51 RT residues 600-1027 11676
13 6CGF 2 B p51 RT p51 subunit, residues 600-1027 11676 2.7.7.49 | Details
14 6C0N 2 B Reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
15 6C0R 2 B Reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
16 6C0P 2 B Reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
17 6DUH 2 B p51 RT residues 600-1027 11676
18 3DLK 2 B p51 RT p51 (UNP residues 605 to 1027) 11676 2.7.7.7 | Details 3.1.26.4 | Details
19 4IFV 2 B Gag-Pol polyprotein P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
20 4IDK 2 B p51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
21 4IFY 2 B p51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
22 5CYM 2 B HIV-1 reverse transcriptase, p51 subunit 11676 2.7.7.49 | Details
23 4KO0 2 B HIV-1 reverse transcriptase, p51 subunit p51 11676 2.7.7.49 | Details
24 6ELI 2 B Gag-Pol polyprotein 11676
25 5CYQ 2 B HIV-1 reverse transcriptase, p51 subunit 11676 2.7.7.49 | Details
26 6DUG 2 B p51 RT residues 600-1027 11676
27 3BGR 2 B p51 RT P51 11676
28 2YKN 2 B REVERSE TRANSCRIPTASE/RIBONUCLEASE H RESIDUES 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
29 4DG1 2 B Reverse Transcriptase P51 subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details
30 5VQZ 2 B p51 RT 11676
31 4I2P 2 B Gag-Pol polyprotein p51 (UNP Residues 600-1077) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
32 5TXO 2 B, D HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details
33 5VQY 2 B p51 RT 11676
34 4IG0 2 B P51 RT P51 (unp residues 600-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
35 5TXN 2 B, D HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details
36 4PQU 2 B, D HIV-1 Reverse Transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
37 5VQX 2 B p51 RT p51 11676
38 5TXM 2 B, D HIV-1 Reverse Transcriptase P51 subunit 11676 2.7.7.7 | Details
39 5VQS 2 B p51 RT 11676
40 2BE2 2 B REVERSE TRANSCRIPTASE P51 SUBUNIT residues 599-1028 11676 2.7.7.49 | Details
41 3ISN 2 D p51 RT 11676
42 5TXP 2 B, D HIV-1 REVERSE TRANSCRIPTASE P61 SUBUNIT 11676 2.7.7.7 | Details
43 5VQW 2 B p51 RT 11676
44 5VQQ 2 B p51 RT 11676
45 5VQR 2 B p51 RT 11676
46 5VQT 2 B p51 RT 11676
47 4WE1 2 B Gag-Pol polyprotein UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
48 5VQV 2 B p51 RT p51 11676
49 5VQU 2 B p51 RT p51 11676
50 4I2Q 2 B Gag-Pol polyprotein p51 (UNP Residues 600-1077) 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
51 5TUQ 2 B HIV-1 REVERSE TRANSCRIPTASE p51 domain residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
52 1EET 2 B HIV-1 REVERSE TRANSCRIPTASE RESIDUES 1001-1427 11676 2.7.7.49 | Details
53 2B6A 2 B Reverse transcriptase p51 subunit RESIDUES 599-1028 11676 2.7.7.49 | Details
54 4R5P 2 B, D HIV-1 reverse transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
55 1IKX 2 B POL POLYPROTEIN 11676 2.7.7.49 | Details
56 4RW6 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
57 3ITH 2 B, D p51 RT 11676
58 3IS9 2 B Reverse transcriptase 11676 2.7.7.49 | Details 2.7.7.7 | Details
59 4RW4 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
60 5TER 2 B HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT UNP residues 600-1027 11676 2.7.7 | Details 2.7.7.49 | Details 2.7.7.7 | Details 3.1 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
61 3QLH 2 B reverse transcriptase/ribonuclease H P51 (UNP residues 605-1027) 11676 2.7.7.49 | Details 2.7.7.7 | Details
62 3QO9 2 B p51 RT 11676 2.7.7.7 | Details 3.1.26.4 | Details
63 3V6D 2 B, D HIV-1 REVERSE TRANSCRIPTASE P51 subunit UNP Residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
64 5C25 2 B HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
65 1S9E 2 B POL polyprotein [Contains: Reverse transcriptase] P51 SUBUNIT 11676 2.7.7.49 | Details
66 4O4G 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
67 4LSL 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
68 3V4I 2 B, D HIV-1 Reverse Transcriptase P51 subunit UNP Residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
69 2YKM 2 B REVERSE TRANSCRIPTASE/RIBONUCLEASE H RESIDUES 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.13 | Details
70 1HQU 2 B POL POLYPROTEIN P51 SUBUNIT 11676 2.7.7.49 | Details
71 1DLO 2 B HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
72 5TW3 2 B HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
73 3IRX 2 B Reverse transcriptase 11676 2.7.7.49 | Details 2.7.7.7 | Details
74 1HQE 2 B POL POLYPROTEIN P51 SUBUNIT 11676 2.7.7.49 | Details
75 1IKY 2 B POL POLYPROTEIN 11676 2.7.7.49 | Details
76 3IG1 2 B HIV-1 Reverse Transcriptase p51 subunit p51 subunit, residues 600-1027 11676 2.7.7.49 | Details
77 1R0A 4 B Reverse transcriptase p51 HIV-1 RT 11676 2.7.7.49 | Details
78 4H4M 2 B Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT HIV-1 Reverse Transcriptase, p55 Subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
79 3KLI 2 B p51 RT 11676
80 2VG5 2 B P51 RT GAG-POL POLYPROTEIN P51 SUBUNIT, RESIDUES 600-1027 11676
81 1IKW 2 B POL POLYPROTEIN 11676 2.7.7.49 | Details
82 1S9G 2 B POL polyprotein [Contains: Reverse transcriptase] P51 SUBUNIT 11676 2.7.7.49 | Details
83 4PUO 2 B, D HIV-1 Reverse Transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
84 4H4O 2 B Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT HIV-1 Reverse Transcriptase, p51 Subunit 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details
85 4MFB 2 B HIV-1 reverse transcriptase, p51 subunit HIV-1 reverse transcriptase, p51 subunit (chain B) 11676 2.7.7.49 | Details
86 4O44 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
87 4PWD 2 B, D HIV-1 Reverse Transcriptase, P51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
88 1IKV 2 B POL POLYPROTEIN 11676 2.7.7.49 | Details
89 2ZE2 2 B p51 RT P51 11676
90 4RW8 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
91 4RW9 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
92 4KKO 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
93 4RW7 2 B Reverse transcriptase/ribonuclease H, p51 subunit 11676 2.7.7.49 | Details
94 1S6P 2 B POL polyprotein [Contains: Reverse transcriptase] P51 SUBUNIT 11676 2.7.7.49 | Details
95 3V81 2 B, D HIV-1 Reverse Transcriptase P51 subunit UNP Residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
96 5UV5 2 B, D p51 RT p51 domain residues 600-1027 11676
97 5HBM 2 B p51 RT p51 domain, residues 604-1027 11676
98 2B5J 2 B Reverse transcriptase P51 SUBUNIT RESIDUES 599-1028 11676 2.7.7.49 | Details
99 2VG7 2 B P51 RT GAG-POL POLYPROTEIN P51 SUBUNIT, RESIDUES 600-1027 11676
100 5TEP 2 B HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT UNP residues 600-1027 11676 2.7.7 | Details 2.7.7.49 | Details 2.7.7.7 | Details 3.1 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
101 1SV5 2 B Reverse Transcriptase P51 SUBUNIT 11676 2.7.7.49 | Details
102 2BAN 2 B Reverse transcriptase P51 subunit RESIDUES 599-1028 11676 2.7.7.49 | Details
103 5J1E 2 B, D HIV-1 REVERSE TRANSCRIPTASE P51 DOMAIN p51 domain, residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.26.4 | Details
104 1S6Q 2 B POL polyprotein [Contains: Reverse transcriptase] P51 SUBUNIT 11676 2.7.7.49 | Details
105 1N6Q 4 B Reverse Transcriptase p51 11676 2.7.7.49 | Details
106 2HMI 4 B HISUBUNIT OF V-1 REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
107 3KLH 2 B p51 RT 11676
108 1HNV 2 B HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) 11676 2.7.7.49 | Details
109 2VG6 2 B P51 RT GAG-POL POLYPROTEIN P51 SUBUNIT, RESIDUES 600-1027 11676
110 2I5J 2 B Reverse transcriptase/ribonuclease H P51 subunit residues 599-1027 11676 2.7.7.49 | Details
111 3JSM 4 B HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details
112 1T05 4 B POL polyprotein HIV-1 reverse transcriptase p51 subunit 11676 2.7.7.49 | Details
113 1HPZ 2 B POL POLYPROTEIN P51 SUBUNIT 11676 2.7.7.49 | Details
114 3HVT 2 B HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) 11676 2.7.7.49 | Details
115 1TVR 2 B REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
116 1SUQ 2 B REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details
117 4LSN 2 B HIV-1 reverse transcriptase, p51 subunit p51 subunit, UNP residues 600-1027 11676 2.7.7.49 | Details
118 1N5Y 4 B REVERSE TRANSCRIPTASE p51 11676 2.7.7.49 | Details
119 1T03 4 B POL polyprotein Reverse transcriptase, p51 subunit 11676 2.7.7.49 | Details
120 4Q0B 2 B, D HIV-1 reverse transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details
121 1BQM 2 B REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
122 1HYS 4 B HIV-1 REVERSE TRANSCRIPTASE P51 11676 2.7.7.49 | Details
123 1BQN 2 B REVERSE TRANSCRIPTASE 11676 2.7.7.49 | Details
124 3JYT 2 B HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT 11676 2.7.7.49 | Details
125 5C42 2 B HIV-1 Reverse Transcriptase, p51 subunit UNP residues 600-1027 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
126 3KLE 2 B, F, J, N p51 RT 11676
127 1J5O 4 B Reverse transcriptase 11676 2.7.7.49 | Details
128 1QE1 2 B REVERSE TRANSCRIPTASE, SUBUNIT P51 SUBUNIT B (P51), RESIDUES 168-594 11676 2.7.7.49 | Details
129 3KLG 2 B, F p51 RT 11676
130 6B19 2 B reverse transcriptase p51 subunit UNP residues 600-1039 11676 2.7.7.49 | Details