Sequence Similarity Clusters for the Entities in PDB 1HQ4

Entity #1 | Chains: A,C
ANTIBODY HA5-19A4 FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26675
95 % 2 2 22246 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 59 145 141
70 % 1235 1822 2
50 % 3011 4489 1
40 % 3011 4489 1
30 % 3525 5290 1
Entity #2 | Chains: B,D
ANTIBODY HA5-19A4 FAB HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38987
95 % 2 2 22180 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 17 20 2039
70 % 1456 2172 1
50 % 3012 4489 1
40 % 3012 4489 1
30 % 3526 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.