Sequence Similarity Clusters for the Entities in PDB 1HQ4

Entity #1 | Chains: A,C
ANTIBODY HA5-19A4 FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27736
95 % 2 2 23124 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 59 145 142
70 % 1544 2327 1
50 % 3130 4713 1
40 % 3130 4713 1
30 % 3683 5567 1
Entity #2 | Chains: B,D
ANTIBODY HA5-19A4 FAB HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40439
95 % 2 2 23059 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 17 20 2130
70 % 1511 2280 2
50 % 3131 4713 1
40 % 3131 4713 1
30 % 3684 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.