Sequence Similarity Clusters for the Entities in PDB 1HQ4

Entity #1 | Chains: A,C
ANTIBODY HA5-19A4 FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28739
95 % 2 2 23925 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 61 148 144
70 % 1655 2474 1
50 % 3354 5011 1
40 % 3354 5011 1
30 % 3973 5941 1
Entity #2 | Chains: B,D
ANTIBODY HA5-19A4 FAB HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41860
95 % 2 2 23860 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 17 20 2228
70 % 1619 2424 2
50 % 3355 5011 1
40 % 3355 5011 1
30 % 3974 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures