Sequence Similarity Clusters for the Entities in PDB 1HQ4

Entity #1 | Chains: A,C
ANTIBODY HA5-19A4 FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28157
95 % 2 2 23468 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 61 148 140
70 % 1597 2392 1
50 % 3236 4843 1
40 % 3236 4843 1
30 % 3796 5705 1
Entity #2 | Chains: B,D
ANTIBODY HA5-19A4 FAB HEAVY CHAIN protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41050
95 % 2 2 23402 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 17 20 2165
70 % 1561 2342 2
50 % 3237 4843 1
40 % 3237 4843 1
30 % 3797 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures