Sequence Similarity Clusters for the Entities in PDB 1HQ3

Entity #1 | Chains: A,E
HISTONE H2A-IV protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6801
95 % 12 175 72 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 12 183 75
70 % 13 191 84
50 % 14 202 107
40 % 14 202 129
30 % 14 202 142
Entity #2 | Chains: B,F
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 75 196
95 % 12 169 81 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 12 169 84
70 % 12 183 94
50 % 12 183 125
40 % 12 183 145
30 % 12 183 159
Entity #3 | Chains: C,G
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 25 808
95 % 17 179 71 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 17 186 76
70 % 17 187 91
50 % 17 191 119
40 % 17 191 141
30 % 17 191 153
Entity #4 | Chains: D,H
HISTONE H4-VI protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 190 53
95 % 17 193 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 17 201 69
70 % 17 201 82
50 % 17 201 111
40 % 17 201 134
30 % 17 201 147

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 5X7X 2 B, F Histone H4 9606
21 5B31 2 B, F Histone H4 9606
22 5B1L 2 B, F Histone H4 10090
23 3UTB 2 B, F Histone H4 8355
24 1M19 3 B, F Histone H4 8355
25 5AVB 2 B, F Histone H4 9606
26 5AVC 2 B, F Histone H4 9606
27 5AV5 2 B, F Histone H4 9606
28 3C1B 2 B, F Histone H4 8355
29 5B1M 2 B, F Histone H4 10090
30 2NQB 3 B, F Histone H4 7227
31 5JA4 2 B Histone H4 9606
32 5OMX 4 B, F Histone H4 8355
33 5F99 2 B, F Histone H4 8355
34 5Z30 2 B, F Histone H4 9606
35 5JRG 2 B, F Histone H4 9606
36 3UT9 2 B, F Histone H4 8355
37 5B32 2 B, F Histone H4 9606
38 3R45 2 B Histone H4 9606
39 4WU8 4 B, F Histone H4 8355
40 1P3I 3 B, F Histone H4 8355
41 3MGR 2 B, F Histone H4 8355
42 1F66 3 B, F HISTONE H4 10090
43 3AZG 2 B, F Histone H4 9606
44 1M18 3 B, F Histone H4 8355
45 5B2J 2 B, F Histone H4 9606
46 2PYO 4 B, F Histone H4 7227
47 1P3L 3 B, F Histone H4 8355
48 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
49 5B0Y 2 B, F Histone H4 9606
50 2CV5 3 B, F Histone H4 9606
51 5CP6 4 B, F Histone H4 8355
52 5XF6 2 B, F Histone H4 8355
53 3MGP 2 B, F Histone H4 8355
54 3MVD 2 B, F Histone H4 8355
55 4J8U 2 B, F Histone H4 8355
56 4WU9 2 B, F Histone H4 8355
57 3REH 2 B, F Histone H4 8355
58 3AZL 2 B, F Histone H4 9606
59 3NQU 2 B Histone H4 9606
60 5BNV 2 B, E Histone H4 9606
61 3AFA 2 B, F Histone H4 9606
62 5E5A 3 B, F Histone H4 8355
63 3REJ 2 B, F Histone H4 8355
64 3AZF 2 B, F Histone H4 9606
65 5GTC 2 B, F Histone H4 9606
66 1P3P 3 B, F Histone H4 8355
67 3AV1 2 B, F Histone H4 9606
68 1M1A 3 B, F Histone H4 8355
69 5CPK 2 B, F Histone H4 9606
70 5AY8 2 B, F Histone H4 9606
71 3MNN 2 B, F Histone H4 8355
72 5BO0 2 B Histone H4 9606
73 1P3G 3 B, F Histone H4 8355
74 4J8W 2 B, F Histone H4 8355
75 1P34 3 B, F Histone H4 8355
76 5XF3 2 B, F Histone H4 9606
77 3X1V 3 B, F Histone H4 9606
78 5ONG 4 B, F Histone H4 8355
79 5ONW 4 B, F Histone H4 8355
80 5DNM 2 B, F Histone H4 8355
81 4HGA 3 C Histone H4 9606
82 4UUZ 2 B HISTONE H4 7227
83 3MGQ 2 B, F Histone H4 8355
84 3WTP 2 B, F Histone H4 9606
85 3X1T 3 B, F Histone H4 9606
86 2NZD 4 B, F Histone H4 8355
87 3A6N 2 B, F Histone H4 9606
88 5DNN 2 B, F Histone H4 8355
89 5GT3 2 B, F Histone H4 9606
90 5GT0 2 B, F Histone H4 9606
91 3LJA 2 B, F Histone H4 8355
92 3AZI 2 B, F Histone H4 9606
93 3TU4 2 B, F Histone H4 8355
94 1P3O 3 B, F Histone H4 8355
95 4Z2M 3 H, J Histone H4 9606
96 1KX4 3 B, F histone H4 8355
97 3AZN 2 B, F Histone H4 9606
98 1P3M 3 B, F Histone H4 8355
99 4J8V 2 B, F Histone H4 8355
100 5B33 2 B, F Histone H4 9606
101 3X1S 2 B, F Histone H4 9606
102 3LZ0 2 B, F Histone H4 8355
103 1P3F 3 B, F Histone H4 8355
104 1P3K 3 B, F Histone H4 8355
105 4XYI 2 B Histone H4 4897
106 5B2I 2 B, F Histone H4 9606
107 1P3A 3 B, F Histone H4 8355
108 3LZ1 2 B, F Histone H4 8355
109 2IO5 3 C Histone H4 8355
110 5GXQ 2 B, F Histone H4 9606
111 2F8N 3 B, F Histone H4 8355
112 4Z5T 2 B, F Histone H4 9606
113 1U35 3 B, F Hist1h4i protein 10090
114 5XM0 2 B, F Histone H4 10090
115 3AV2 2 B, F Histone H4 9606
116 3AYW 2 B, F Histone H4 9606
117 5XF5 2 B, F Histone H4 9606
118 3AZJ 2 B, F Histone H4 9606
119 3REK 2 B, F Histone H4 8355
120 4KGC 2 B, F Histone H4 8355
121 1ZLA 3 B, F Histone H4 8355
122 5GSU 2 B, F Histone H4 9606
123 5XF4 2 B, F Histone H4 9606
124 3REL 2 B, F Histone H4 8355
125 5GSE 2 B, F, L, P Histone H4 9606
126 3REI 2 B, F Histone H4 8355
127 1P3B 3 B, F Histone H4 8355
128 3WKJ 2 B, F Histone H4 9606
129 3AZK 2 B, F Histone H4 9606
130 4J8X 2 B, F Histone H4 8355
131 3LEL 2 B, F, L, P Histone H4 8355
132 3KUY 2 B, F Histone H4 8355
133 4R8P 2 B, F Histone H4 8355
134 3AZM 2 B, F Histone H4 9606
135 3X1U 3 B, F Histone H4 9606
136 3MGS 2 B, F Histone H4 8355
137 3WA9 2 B, F Histone H4 9606
138 3C1C 2 B, F Histone H4 8355
139 3AZH 2 B, F Histone H4 9606
140 5B40 2 B, F Histone H4 9606
141 3WAA 2 B, F Histone H4 9606
142 5CPI 2 B, F Histone H4 9606
143 3AZE 2 B, F Histone H4 9606
144 3W96 2 B, F Histone H4 9606
145 5XM1 2 B, F Histone H4 10090
146 5CPJ 2 B, F Histone H4 9606
147 5B24 2 B, F Histone H4 9606
148 5BS7 2 C, D Histone H4 8355
149 5C3I 3 C, G, K, O, S, W Histone H4 9606
150 2HIO 4 D PROTEIN (HISTONE H4) 9031
151 4QLC 4 B, F Histone H4 7227
152 4LD9 2 B, F Histone H4 8355
153 3O62 2 B, F Histone H4 8355
154 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
155 5KDM 2 B Histone H4 9606
156 3W97 2 B, F Histone H4 9606
157 4YM5 2 B, F Histone H4 9606
158 4YM6 2 B, F Histone H4 9606
159 2FJ7 4 B, F Histone H4 8355
160 3W98 2 B, F Histone H4 9606
161 4ZUX 2 B, F, L, P Histone H4 8355
162 3AN2 2 B, F Histone H4 9606
163 5BSA 2 C, D Histone H4 8355
164 3B6F 4 B, F Histone H4 8355
165 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
166 3B6G 4 B, F Histone H4 8355
167 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
168 3KXB 2 B, F Histone H4 8355
169 5HQ2 2 B Histone H4 8355
170 5OXV 4 B, F, L, P Histone H4 8355
171 1ZBB 4 B, F, b, f Histone H4 8355
172 6A5O 17 b, f Histone H4 9606
173 6A5P 17 b, f Histone H4 9606
174 6A5R 17 b, f Histone H4 9606
175 6A5T 17 b, f Histone H4 9606
176 6A5U 17 b, f Histone H4 9606
177 6A5V 17 b, f Histone H4 9606
178 6A5L 17 b, f Histone H4 9606
179 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
180 6FTX 2 B, F Histone H4 8355
181 6FML 10 N, R Histone H4 9606
182 6C0W 2 B, F Histone H4 9606
183 6BUZ 2 B, F Histone H4 9606
184 6ETX 6 J, N Histone H4 9606
185 6ESF 2 B, F Histone H4 8355
186 6ESG 2 B, F Histone H4 8355
187 6ESH 2 B, F Histone H4 8355
188 6ESI 2 B, F Histone H4 8355
189 5O9G 2 B, F Histone H4 8355
190 5X0X 2 B, F Histone H4 8355
191 5X0Y 2 B, F Histone H4 8355
192 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
193 3C9K 4 D, H Histone H4 9031