Sequence Similarity Clusters for the Entities in PDB 1HQ3

Entity #1 | Chains: A,E
HISTONE H2A-IV protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6515
95 % 10 163 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 10 171 74
70 % 11 177 90
50 % 12 187 109
40 % 12 187 132
30 % 12 187 145
Entity #2 | Chains: B,F
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 73 195
95 % 10 157 89 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 10 157 92
70 % 10 169 100
50 % 10 169 134
40 % 10 169 150
30 % 10 169 169
Entity #3 | Chains: C,G
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 798
95 % 15 168 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 15 171 79
70 % 15 172 95
50 % 15 176 124
40 % 15 176 145
30 % 15 176 160
Entity #4 | Chains: D,H
HISTONE H4-VI protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 178 55
95 % 15 181 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 15 185 70
70 % 15 185 89
50 % 15 185 118
40 % 15 185 141
30 % 15 185 153

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 4H9R 2 B Histone H4 9606
9 1S32 3 B, F Histone H4 8355
10 4H9P 2 B Histone H4 9606
11 5AV8 2 B, F Histone H4 9606
12 1KX3 3 B, F histone H4 8355
13 5AV9 2 B, F Histone H4 9606
14 5AV6 2 B, F Histone H4 9606
15 1HQ3 4 D, H HISTONE H4-VI 9031
16 5BNX 2 B Histone H4 9606
17 3UTA 2 B, F Histone H4 8355
18 5X7X 2 B, F Histone H4 9606
19 5B31 2 B, F Histone H4 9606
20 5B1L 2 B, F Histone H4 10090
21 3UTB 2 B, F Histone H4 8355
22 1M19 3 B, F Histone H4 8355
23 5AVB 2 B, F Histone H4 9606
24 5AVC 2 B, F Histone H4 9606
25 5AV5 2 B, F Histone H4 9606
26 3C1B 2 B, F Histone H4 8355
27 5B1M 2 B, F Histone H4 10090
28 2NQB 3 B, F Histone H4 7227
29 5JA4 2 B Histone H4 9606
30 5OMX 4 B, F Histone H4 8355
31 5JRG 2 B, F Histone H4 9606
32 3UT9 2 B, F Histone H4 8355
33 5B32 2 B, F Histone H4 9606
34 3R45 2 B Histone H4 9606
35 4WU8 4 B, F Histone H4 8355
36 3MGR 2 B, F Histone H4 8355
37 1F66 3 B, F HISTONE H4 10090
38 3AZG 2 B, F Histone H4 9606
39 1M18 3 B, F Histone H4 8355
40 5B2J 2 B, F Histone H4 9606
41 2PYO 4 B, F Histone H4 7227
42 1P3L 3 B, F Histone H4 8355
43 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
44 5B0Y 2 B, F Histone H4 9606
45 2CV5 3 B, F Histone H4 9606
46 5CP6 4 B, F Histone H4 8355
47 5XF6 2 B, F Histone H4 8355
48 3MGP 2 B, F Histone H4 8355
49 3MVD 2 B, F Histone H4 8355
50 4J8U 2 B, F Histone H4 8355
51 4WU9 2 B, F Histone H4 8355
52 3REH 2 B, F Histone H4 8355
53 3AZL 2 B, F Histone H4 9606
54 3NQU 2 B Histone H4 9606
55 5BNV 2 B, E Histone H4 9606
56 3AFA 2 B, F Histone H4 9606
57 5E5A 3 B, F Histone H4 8355
58 3REJ 2 B, F Histone H4 8355
59 3AZF 2 B, F Histone H4 9606
60 5GTC 2 B, F Histone H4 9606
61 1P3P 3 B, F Histone H4 8355
62 3AV1 2 B, F Histone H4 9606
63 1M1A 3 B, F Histone H4 8355
64 5CPK 2 B, F Histone H4 9606
65 5AY8 2 B, F Histone H4 9606
66 3MNN 2 B, F Histone H4 8355
67 5BO0 2 B Histone H4 9606
68 1P3G 3 B, F Histone H4 8355
69 4J8W 2 B, F Histone H4 8355
70 1P34 3 B, F Histone H4 8355
71 5XF3 2 B, F Histone H4 9606
72 3X1V 3 B, F Histone H4 9606
73 5ONG 4 B, F Histone H4 8355
74 5ONW 4 B, F Histone H4 8355
75 5DNM 2 B, F Histone H4 8355
76 4HGA 3 C Histone H4 9606
77 4UUZ 2 B HISTONE H4 7227
78 3MGQ 2 B, F Histone H4 8355
79 3WTP 2 B, F Histone H4 9606
80 3X1T 3 B, F Histone H4 9606
81 2NZD 4 B, F Histone H4 8355
82 3A6N 2 B, F Histone H4 9606
83 5DNN 2 B, F Histone H4 8355
84 5GT3 2 B, F Histone H4 9606
85 5GT0 2 B, F Histone H4 9606
86 3LJA 2 B, F Histone H4 8355
87 3AZI 2 B, F Histone H4 9606
88 3TU4 2 B, F Histone H4 8355
89 4Z2M 3 H, J Histone H4 9606
90 1KX4 3 B, F histone H4 8355
91 3AZN 2 B, F Histone H4 9606
92 1P3M 3 B, F Histone H4 8355
93 4J8V 2 B, F Histone H4 8355
94 5B33 2 B, F Histone H4 9606
95 3X1S 2 B, F Histone H4 9606
96 3LZ0 2 B, F Histone H4 8355
97 1P3F 3 B, F Histone H4 8355
98 1P3K 3 B, F Histone H4 8355
99 4XYI 2 B Histone H4 4897
100 5B2I 2 B, F Histone H4 9606
101 1P3A 3 B, F Histone H4 8355
102 3LZ1 2 B, F Histone H4 8355
103 2IO5 3 C Histone H4 8355
104 5GXQ 2 B, F Histone H4 9606
105 2F8N 3 B, F Histone H4 8355
106 4Z5T 2 B, F Histone H4 9606
107 1U35 3 B, F Hist1h4i protein 10090
108 5XM0 2 B, F Histone H4 10090
109 3AV2 2 B, F Histone H4 9606
110 3AYW 2 B, F Histone H4 9606
111 5XF5 2 B, F Histone H4 9606
112 3AZJ 2 B, F Histone H4 9606
113 3REK 2 B, F Histone H4 8355
114 4KGC 2 B, F Histone H4 8355
115 1ZLA 3 B, F Histone H4 8355
116 5GSU 2 B, F Histone H4 9606
117 5XF4 2 B, F Histone H4 9606
118 3REL 2 B, F Histone H4 8355
119 5GSE 2 B, F, L, P Histone H4 9606
120 3REI 2 B, F Histone H4 8355
121 1P3B 3 B, F Histone H4 8355
122 3WKJ 2 B, F Histone H4 9606
123 3AZK 2 B, F Histone H4 9606
124 4J8X 2 B, F Histone H4 8355
125 3LEL 2 B, F, L, P Histone H4 8355
126 3KUY 2 B, F Histone H4 8355
127 4R8P 2 B, F Histone H4 8355
128 3AZM 2 B, F Histone H4 9606
129 3X1U 3 B, F Histone H4 9606
130 3MGS 2 B, F Histone H4 8355
131 3WA9 2 B, F Histone H4 9606
132 3C1C 2 B, F Histone H4 8355
133 3AZH 2 B, F Histone H4 9606
134 5B40 2 B, F Histone H4 9606
135 3WAA 2 B, F Histone H4 9606
136 5CPI 2 B, F Histone H4 9606
137 3AZE 2 B, F Histone H4 9606
138 3W96 2 B, F Histone H4 9606
139 5XM1 2 B, F Histone H4 10090
140 5CPJ 2 B, F Histone H4 9606
141 5B24 2 B, F Histone H4 9606
142 5BS7 2 C, D Histone H4 8355
143 5C3I 3 C, G, K, O, S, W Histone H4 9606
144 2HIO 4 D PROTEIN (HISTONE H4) 9031
145 4QLC 4 B, F Histone H4 7227
146 4LD9 2 B, F Histone H4 8355
147 3O62 2 B, F Histone H4 8355
148 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
149 5KDM 2 B Histone H4 9606
150 3W97 2 B, F Histone H4 9606
151 4YM5 2 B, F Histone H4 9606
152 4YM6 2 B, F Histone H4 9606
153 2FJ7 4 B, F Histone H4 8355
154 3W98 2 B, F Histone H4 9606
155 4ZUX 2 B, F, L, P Histone H4 8355
156 3AN2 2 B, F Histone H4 9606
157 5BSA 2 C, D Histone H4 8355
158 3B6F 4 B, F Histone H4 8355
159 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
160 3B6G 4 B, F Histone H4 8355
161 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
162 3KXB 2 B, F Histone H4 8355
163 5HQ2 2 B Histone H4 8355
164 5OXV 4 B, F, L, P Histone H4 8355
165 1ZBB 4 B, F, b, f Histone H4 8355
166 6FML 10 N, R Histone H4 9606
167 6C0W 2 B, F Histone H4 9606
168 6BUZ 2 B, F Histone H4 9606
169 6ETX 6 J, N Histone H4 9606
170 6ESF 2 B, F Histone H4 8355
171 6ESG 2 B, F Histone H4 8355
172 6ESH 2 B, F Histone H4 8355
173 6ESI 2 B, F Histone H4 8355
174 5O9G 2 B, F Histone H4 8355
175 5X0X 2 B, F Histone H4 8355
176 5X0Y 2 B, F Histone H4 8355
177 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
178 3C9K 4 D, H Histone H4 9031