Sequence Similarity Clusters for the Entities in PDB 1HQ3

Entity #1 | Chains: A,E
HISTONE H2A-IV protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7081
95 % 12 191 73 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 12 200 70
70 % 13 208 79
50 % 14 219 103
40 % 14 219 121
30 % 14 219 132
Entity #2 | Chains: B,F
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 974
95 % 6 113 151 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 12 186 80
70 % 12 200 88
50 % 12 200 117
40 % 12 200 139
30 % 12 200 152
Entity #3 | Chains: C,G
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 71 200
95 % 17 193 74 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 17 200 74
70 % 17 203 85
50 % 17 207 112
40 % 17 207 132
30 % 17 207 146
Entity #4 | Chains: D,H
HISTONE H4-VI protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 206 51
95 % 17 209 62 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 17 217 67
70 % 17 217 77
50 % 17 217 106
40 % 17 217 125
30 % 17 217 141

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 5X7X 2 B, F Histone H4 9606
21 5B31 2 B, F Histone H4 9606
22 5B1L 2 B, F Histone H4 10090
23 3UTB 2 B, F Histone H4 8355
24 1M19 3 B, F Histone H4 8355
25 5AVB 2 B, F Histone H4 9606
26 5AVC 2 B, F Histone H4 9606
27 5AV5 2 B, F Histone H4 9606
28 3C1B 2 B, F Histone H4 8355
29 5B1M 2 B, F Histone H4 10090
30 2NQB 3 B, F Histone H4 7227
31 5JA4 2 B Histone H4 9606
32 5OMX 4 B, F Histone H4 8355
33 5Z30 2 B, F Histone H4 9606
34 5JRG 2 B, F Histone H4 9606
35 3UT9 2 B, F Histone H4 8355
36 5B32 2 B, F Histone H4 9606
37 3R45 2 B Histone H4 9606
38 4WU8 4 B, F Histone H4 8355
39 3MGR 2 B, F Histone H4 8355
40 1F66 3 B, F HISTONE H4 10090
41 3AZG 2 B, F Histone H4 9606
42 1M18 3 B, F Histone H4 8355
43 5B2J 2 B, F Histone H4 9606
44 2PYO 4 B, F Histone H4 7227
45 1P3L 3 B, F Histone H4 8355
46 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
47 5B0Y 2 B, F Histone H4 9606
48 2CV5 3 B, F Histone H4 9606
49 5CP6 4 B, F Histone H4 8355
50 5ZBX 2 B, F Histone H4 9606
51 5XF6 2 B, F Histone H4 8355
52 3MGP 2 B, F Histone H4 8355
53 3MVD 2 B, F Histone H4 8355
54 4J8U 2 B, F Histone H4 8355
55 4WU9 2 B, F Histone H4 8355
56 3REH 2 B, F Histone H4 8355
57 3AZL 2 B, F Histone H4 9606
58 5Z23 2 B, F Histone H4 9606
59 3NQU 2 B Histone H4 9606
60 5BNV 2 B, E Histone H4 9606
61 3AFA 2 B, F Histone H4 9606
62 5E5A 3 B, F Histone H4 8355
63 3REJ 2 B, F Histone H4 8355
64 3AZF 2 B, F Histone H4 9606
65 5GTC 2 B, F Histone H4 9606
66 1P3P 3 B, F Histone H4 8355
67 3AV1 2 B, F Histone H4 9606
68 1M1A 3 B, F Histone H4 8355
69 5CPK 2 B, F Histone H4 9606
70 5AY8 2 B, F Histone H4 9606
71 3MNN 2 B, F Histone H4 8355
72 5BO0 2 B Histone H4 9606
73 1P3G 3 B, F Histone H4 8355
74 4J8W 2 B, F Histone H4 8355
75 1P34 3 B, F Histone H4 8355
76 5XF3 2 B, F Histone H4 9606
77 3X1V 3 B, F Histone H4 9606
78 5ONG 4 B, F Histone H4 8355
79 5ONW 4 B, F Histone H4 8355
80 5DNM 2 B, F Histone H4 8355
81 4HGA 3 C Histone H4 9606
82 4UUZ 2 B HISTONE H4 7227
83 3MGQ 2 B, F Histone H4 8355
84 3WTP 2 B, F Histone H4 9606
85 3X1T 3 B, F Histone H4 9606
86 2NZD 4 B, F Histone H4 8355
87 3A6N 2 B, F Histone H4 9606
88 5DNN 2 B, F Histone H4 8355
89 5GT3 2 B, F Histone H4 9606
90 5GT0 2 B, F Histone H4 9606
91 3LJA 2 B, F Histone H4 8355
92 3AZI 2 B, F Histone H4 9606
93 3TU4 2 B, F Histone H4 8355
94 4Z2M 3 H, J Histone H4 9606
95 1KX4 3 B, F histone H4 8355
96 3AZN 2 B, F Histone H4 9606
97 1P3M 3 B, F Histone H4 8355
98 4J8V 2 B, F Histone H4 8355
99 5B33 2 B, F Histone H4 9606
100 3X1S 2 B, F Histone H4 9606
101 3LZ0 2 B, F Histone H4 8355
102 1P3F 3 B, F Histone H4 8355
103 1P3K 3 B, F Histone H4 8355
104 4XYI 2 B Histone H4 4897
105 5B2I 2 B, F Histone H4 9606
106 1P3A 3 B, F Histone H4 8355
107 3LZ1 2 B, F Histone H4 8355
108 2IO5 3 C Histone H4 8355
109 5GXQ 2 B, F Histone H4 9606
110 2F8N 3 B, F Histone H4 8355
111 4Z5T 2 B, F Histone H4 9606
112 1U35 3 B, F Hist1h4i protein 10090
113 5XM0 2 B, F Histone H4 10090
114 3AV2 2 B, F Histone H4 9606
115 3AYW 2 B, F Histone H4 9606
116 5XF5 2 B, F Histone H4 9606
117 3AZJ 2 B, F Histone H4 9606
118 3REK 2 B, F Histone H4 8355
119 4KGC 2 B, F Histone H4 8355
120 1ZLA 3 B, F Histone H4 8355
121 5GSU 2 B, F Histone H4 9606
122 5XF4 2 B, F Histone H4 9606
123 3REL 2 B, F Histone H4 8355
124 5GSE 2 B, F, L, P Histone H4 9606
125 3REI 2 B, F Histone H4 8355
126 1P3B 3 B, F Histone H4 8355
127 3WKJ 2 B, F Histone H4 9606
128 3AZK 2 B, F Histone H4 9606
129 4J8X 2 B, F Histone H4 8355
130 3LEL 2 B, F, L, P Histone H4 8355
131 3KUY 2 B, F Histone H4 8355
132 4R8P 2 B, F Histone H4 8355
133 3AZM 2 B, F Histone H4 9606
134 3X1U 3 B, F Histone H4 9606
135 3MGS 2 B, F Histone H4 8355
136 3WA9 2 B, F Histone H4 9606
137 3C1C 2 B, F Histone H4 8355
138 3AZH 2 B, F Histone H4 9606
139 5B40 2 B, F Histone H4 9606
140 3WAA 2 B, F Histone H4 9606
141 5CPI 2 B, F Histone H4 9606
142 3AZE 2 B, F Histone H4 9606
143 3W96 2 B, F Histone H4 9606
144 5XM1 2 B, F Histone H4 10090
145 5CPJ 2 B, F Histone H4 9606
146 5B24 2 B, F Histone H4 9606
147 5BS7 2 C, D Histone H4 8355
148 5C3I 3 C, G, K, O, S, W Histone H4 9606
149 2HIO 4 D PROTEIN (HISTONE H4) 9031
150 4QLC 4 B, F Histone H4 7227
151 4LD9 2 B, F Histone H4 8355
152 3O62 2 B, F Histone H4 8355
153 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
154 5KDM 2 B Histone H4 9606
155 3W97 2 B, F Histone H4 9606
156 4YM5 2 B, F Histone H4 9606
157 4YM6 2 B, F Histone H4 9606
158 2FJ7 4 B, F Histone H4 8355
159 3W98 2 B, F Histone H4 9606
160 4ZUX 2 B, F, L, P Histone H4 8355
161 3AN2 2 B, F Histone H4 9606
162 5BSA 2 C, D Histone H4 8355
163 3B6F 4 B, F Histone H4 8355
164 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
165 3B6G 4 B, F Histone H4 8355
166 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
167 3KXB 2 B, F Histone H4 8355
168 5HQ2 2 B Histone H4 8355
169 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
170 5OXV 4 B, F, L, P Histone H4 8355
171 1ZBB 4 B, F, b, f Histone H4 8355
172 6J99 2 B, F Histone H4 8355
173 6NQA 3 B, F Histone H4 8355
174 6NOG 2 B, F Histone H4 8355
175 6NN6 2 B, F Histone H4 8355
176 6J4W 20 b, f Histone H4 9606
177 6J4X 20 b, f Histone H4 9606
178 6J4Y 20 b, f Histone H4 9606
179 6J4Z 19 b, f Histone H4 9606
180 6J50 19 b, f Histone H4 9606
181 6J51 20 b, f Histone H4 9606
182 6NJ9 1 B, F Histone H4 8355
183 6I84 5 O, U Histone H4 8355
184 6IR9 20 b, f Histone H4 9606
185 6HTS 6 J, N Histone H4 9606
186 6A5O 17 b, f Histone H4 9606
187 6A5P 17 b, f Histone H4 9606
188 6A5R 17 b, f Histone H4 9606
189 6A5T 17 b, f Histone H4 9606
190 6A5U 17 b, f Histone H4 9606
191 6A5V 17 b, f Histone H4 9606
192 6A5L 17 b, f Histone H4 9606
193 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
194 6FTX 2 B, F Histone H4 8355
195 6FML 10 N, R Histone H4 9606
196 6C0W 2 B, F Histone H4 9606
197 6BUZ 2 B, F Histone H4 9606
198 6ESF 2 B, F Histone H4 8355
199 6ESG 2 B, F Histone H4 8355
200 6ESH 2 B, F Histone H4 8355
201 6ESI 2 B, F Histone H4 8355
202 5O9G 2 B, F Histone H4 8355
203 5X0X 2 B, F Histone H4 8355
204 5X0Y 2 B, F Histone H4 8355
205 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
206 3C9K 4 D, H Histone H4 9031