Sequence Similarity Clusters for the Entities in PDB 1HQ3

Entity #1 | Chains: A,E
HISTONE H2A-IV protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6801
95 % 12 175 72 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 12 183 75
70 % 13 191 84
50 % 14 202 107
40 % 14 202 129
30 % 14 202 142
Entity #2 | Chains: B,F
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 75 196
95 % 12 169 81 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 12 169 84
70 % 12 183 94
50 % 12 183 125
40 % 12 183 145
30 % 12 183 159
Entity #3 | Chains: C,G
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 25 808
95 % 17 179 71 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 17 186 76
70 % 17 187 91
50 % 17 191 119
40 % 17 191 141
30 % 17 191 153
Entity #4 | Chains: D,H
HISTONE H4-VI protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 190 53
95 % 17 193 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 17 201 69
70 % 17 201 82
50 % 17 201 111
40 % 17 201 134
30 % 17 201 147

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 5X7X 2 B, F Histone H4 9606
21 5B31 2 B, F Histone H4 9606
22 5B1L 2 B, F Histone H4 10090
23 3UTB 2 B, F Histone H4 8355
24 1M19 3 B, F Histone H4 8355
25 5AVB 2 B, F Histone H4 9606
26 5AVC 2 B, F Histone H4 9606
27 5AV5 2 B, F Histone H4 9606
28 3C1B 2 B, F Histone H4 8355
29 5B1M 2 B, F Histone H4 10090
30 2NQB 3 B, F Histone H4 7227
31 5JA4 2 B Histone H4 9606
32 5OMX 4 B, F Histone H4 8355
33 5Z30 2 B, F Histone H4 9606
34 5JRG 2 B, F Histone H4 9606
35 3UT9 2 B, F Histone H4 8355
36 5B32 2 B, F Histone H4 9606
37 3R45 2 B Histone H4 9606
38 4WU8 4 B, F Histone H4 8355
39 3MGR 2 B, F Histone H4 8355
40 1F66 3 B, F HISTONE H4 10090
41 3AZG 2 B, F Histone H4 9606
42 1M18 3 B, F Histone H4 8355
43 5B2J 2 B, F Histone H4 9606
44 2PYO 4 B, F Histone H4 7227
45 1P3L 3 B, F Histone H4 8355
46 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
47 5B0Y 2 B, F Histone H4 9606
48 2CV5 3 B, F Histone H4 9606
49 5CP6 4 B, F Histone H4 8355
50 5XF6 2 B, F Histone H4 8355
51 3MGP 2 B, F Histone H4 8355
52 3MVD 2 B, F Histone H4 8355
53 4J8U 2 B, F Histone H4 8355
54 4WU9 2 B, F Histone H4 8355
55 3REH 2 B, F Histone H4 8355
56 3AZL 2 B, F Histone H4 9606
57 3NQU 2 B Histone H4 9606
58 5BNV 2 B, E Histone H4 9606
59 3AFA 2 B, F Histone H4 9606
60 5E5A 3 B, F Histone H4 8355
61 3REJ 2 B, F Histone H4 8355
62 3AZF 2 B, F Histone H4 9606
63 5GTC 2 B, F Histone H4 9606
64 1P3P 3 B, F Histone H4 8355
65 3AV1 2 B, F Histone H4 9606
66 1M1A 3 B, F Histone H4 8355
67 5CPK 2 B, F Histone H4 9606
68 5AY8 2 B, F Histone H4 9606
69 3MNN 2 B, F Histone H4 8355
70 5BO0 2 B Histone H4 9606
71 1P3G 3 B, F Histone H4 8355
72 4J8W 2 B, F Histone H4 8355
73 1P34 3 B, F Histone H4 8355
74 5XF3 2 B, F Histone H4 9606
75 3X1V 3 B, F Histone H4 9606
76 5ONG 4 B, F Histone H4 8355
77 5ONW 4 B, F Histone H4 8355
78 5DNM 2 B, F Histone H4 8355
79 4HGA 3 C Histone H4 9606
80 4UUZ 2 B HISTONE H4 7227
81 3MGQ 2 B, F Histone H4 8355
82 3WTP 2 B, F Histone H4 9606
83 3X1T 3 B, F Histone H4 9606
84 2NZD 4 B, F Histone H4 8355
85 3A6N 2 B, F Histone H4 9606
86 5DNN 2 B, F Histone H4 8355
87 5GT3 2 B, F Histone H4 9606
88 5GT0 2 B, F Histone H4 9606
89 3LJA 2 B, F Histone H4 8355
90 3AZI 2 B, F Histone H4 9606
91 3TU4 2 B, F Histone H4 8355
92 4Z2M 3 H, J Histone H4 9606
93 1KX4 3 B, F histone H4 8355
94 3AZN 2 B, F Histone H4 9606
95 1P3M 3 B, F Histone H4 8355
96 4J8V 2 B, F Histone H4 8355
97 5B33 2 B, F Histone H4 9606
98 3X1S 2 B, F Histone H4 9606
99 3LZ0 2 B, F Histone H4 8355
100 1P3F 3 B, F Histone H4 8355
101 1P3K 3 B, F Histone H4 8355
102 4XYI 2 B Histone H4 4897
103 5B2I 2 B, F Histone H4 9606
104 1P3A 3 B, F Histone H4 8355
105 3LZ1 2 B, F Histone H4 8355
106 2IO5 3 C Histone H4 8355
107 5GXQ 2 B, F Histone H4 9606
108 2F8N 3 B, F Histone H4 8355
109 4Z5T 2 B, F Histone H4 9606
110 1U35 3 B, F Hist1h4i protein 10090
111 5XM0 2 B, F Histone H4 10090
112 3AV2 2 B, F Histone H4 9606
113 3AYW 2 B, F Histone H4 9606
114 5XF5 2 B, F Histone H4 9606
115 3AZJ 2 B, F Histone H4 9606
116 3REK 2 B, F Histone H4 8355
117 4KGC 2 B, F Histone H4 8355
118 1ZLA 3 B, F Histone H4 8355
119 5GSU 2 B, F Histone H4 9606
120 5XF4 2 B, F Histone H4 9606
121 3REL 2 B, F Histone H4 8355
122 5GSE 2 B, F, L, P Histone H4 9606
123 3REI 2 B, F Histone H4 8355
124 1P3B 3 B, F Histone H4 8355
125 3WKJ 2 B, F Histone H4 9606
126 3AZK 2 B, F Histone H4 9606
127 4J8X 2 B, F Histone H4 8355
128 3LEL 2 B, F, L, P Histone H4 8355
129 3KUY 2 B, F Histone H4 8355
130 4R8P 2 B, F Histone H4 8355
131 3AZM 2 B, F Histone H4 9606
132 3X1U 3 B, F Histone H4 9606
133 3MGS 2 B, F Histone H4 8355
134 3WA9 2 B, F Histone H4 9606
135 3C1C 2 B, F Histone H4 8355
136 3AZH 2 B, F Histone H4 9606
137 5B40 2 B, F Histone H4 9606
138 3WAA 2 B, F Histone H4 9606
139 5CPI 2 B, F Histone H4 9606
140 3AZE 2 B, F Histone H4 9606
141 3W96 2 B, F Histone H4 9606
142 5XM1 2 B, F Histone H4 10090
143 5CPJ 2 B, F Histone H4 9606
144 5B24 2 B, F Histone H4 9606
145 5BS7 2 C, D Histone H4 8355
146 5C3I 3 C, G, K, O, S, W Histone H4 9606
147 2HIO 4 D PROTEIN (HISTONE H4) 9031
148 4QLC 4 B, F Histone H4 7227
149 4LD9 2 B, F Histone H4 8355
150 3O62 2 B, F Histone H4 8355
151 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
152 5KDM 2 B Histone H4 9606
153 3W97 2 B, F Histone H4 9606
154 4YM5 2 B, F Histone H4 9606
155 4YM6 2 B, F Histone H4 9606
156 2FJ7 4 B, F Histone H4 8355
157 3W98 2 B, F Histone H4 9606
158 4ZUX 2 B, F, L, P Histone H4 8355
159 3AN2 2 B, F Histone H4 9606
160 5BSA 2 C, D Histone H4 8355
161 3B6F 4 B, F Histone H4 8355
162 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
163 3B6G 4 B, F Histone H4 8355
164 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
165 3KXB 2 B, F Histone H4 8355
166 5HQ2 2 B Histone H4 8355
167 5OXV 4 B, F, L, P Histone H4 8355
168 1ZBB 4 B, F, b, f Histone H4 8355
169 6A5O 17 b, f Histone H4 9606
170 6A5P 17 b, f Histone H4 9606
171 6A5R 17 b, f Histone H4 9606
172 6A5T 17 b, f Histone H4 9606
173 6A5U 17 b, f Histone H4 9606
174 6A5V 17 b, f Histone H4 9606
175 6A5L 17 b, f Histone H4 9606
176 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
177 6FTX 2 B, F Histone H4 8355
178 6FML 10 N, R Histone H4 9606
179 6C0W 2 B, F Histone H4 9606
180 6BUZ 2 B, F Histone H4 9606
181 6ETX 6 J, N Histone H4 9606
182 6ESF 2 B, F Histone H4 8355
183 6ESG 2 B, F Histone H4 8355
184 6ESH 2 B, F Histone H4 8355
185 6ESI 2 B, F Histone H4 8355
186 5O9G 2 B, F Histone H4 8355
187 5X0X 2 B, F Histone H4 8355
188 5X0Y 2 B, F Histone H4 8355
189 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
190 3C9K 4 D, H Histone H4 9031