Sequence Similarity Clusters for the Entities in PDB 1HQ3

Entity #1 | Chains: A,E
HISTONE H2A-IV protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6515
95 % 10 163 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 10 171 74
70 % 11 177 90
50 % 12 187 109
40 % 12 187 132
30 % 12 187 145
Entity #2 | Chains: B,F
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 73 195
95 % 10 157 89 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 10 157 92
70 % 10 169 100
50 % 10 169 134
40 % 10 169 150
30 % 10 169 169
Entity #3 | Chains: C,G
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 798
95 % 15 168 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 15 171 79
70 % 15 172 95
50 % 15 176 124
40 % 15 176 145
30 % 15 176 160
Entity #4 | Chains: D,H
HISTONE H4-VI protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 178 55
95 % 15 181 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 15 185 70
70 % 15 185 89
50 % 15 185 118
40 % 15 185 141
30 % 15 185 153

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 1 A, E Histone H2A-IV 9031
2 1KX5 5 C, G histone H2A.1 8355
3 2ARO 1 A, E Histone H2A-IV 9031
4 5B0Z 3 C, G Histone H2A type 1-B/E 9606
5 1S32 4 C, G histone H2A 8355
6 5AV8 3 C, G Histone H2A type 1-B/E 9606
7 1KX3 4 C, G histone H2A.1 8355
8 5AV9 3 C, G Histone H2A type 1-B/E 9606
9 5AV6 3 C, G Histone H2A type 1-B/E 9606
10 1HQ3 1 A, E HISTONE H2A-IV 9031
11 3UTA 3 C, G Histone H2A 8355
12 4KHA 2 B Histone H2A UNP residues 15-103 8355
13 5X7X 3 C, G Histone H2A type 1-B/E 9606
14 5B31 3 C Histone H2A type 1-B/E 9606
15 5B1L 3 C, G Histone H2A type 1 10090
16 3UTB 3 C, G Histone H2A 8355
17 1M19 4 C, G Histone H2A.1 8355
18 5AVB 3 C, G Histone H2A type 1-B/E 9606
19 5AVC 3 C, G Histone H2A type 1-B/E 9606
20 5AV5 3 C, G Histone H2A type 1-B/E 9606
21 3C1B 3 C, G Histone H2A type 1 8355
22 5B1M 3 C, G Histone H2A type 1 10090
23 5OMX 5 C, G Histone H2A 8355
24 5F99 3 C, G Histone H2A type 1 8355
25 5JRG 3 C, G Histone H2A type 1-B/E 9606
26 3UT9 3 C, G Histone H2A 8355
27 5B32 3 C Histone H2A type 1-B/E 9606
28 4WU8 5 C, G Histone H2A type 1 8355
29 1P3I 4 C, G Histone H2A 8355
30 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
31 3AZG 3 C, G Histone H2A type 1-B/E 9606
32 1M18 4 C, G Histone H2A.1 8355
33 5B2J 3 C, G Histone H2A type 1-B/E 9606
34 1P3L 4 C, G Histone H2A 8355
35 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
36 5B0Y 3 C, G Histone H2A type 1-B/E 9606
37 2CV5 4 C, G Histone H2A.a 9606
38 5CP6 5 C, G Histone H2A 8355
39 5XF6 3 C, G Histone H2A 8355
40 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
41 3MVD 3 C, G Histone H2A 8355
42 4J8U 3 C, G Histone H2A type 1 8355
43 4WU9 3 C, G Histone H2A type 1 8355
44 3REH 3 C, G Histone H2A type 1 8355
45 3AZL 3 C, G Histone H2A type 1-B/E 9606
46 4XZQ 3 C, G Histone H2A residues 15-121 8355
47 3AFA 3 C, G Histone H2A type 1-B/E 9606
48 5E5A 4 C, G Histone H2A 8355
49 3REJ 3 C, G Histone H2A type 1 8355
50 3AZF 3 C, G Histone H2A type 1-B/E 9606
51 5GTC 3 C, G Histone H2A type 1-B/E 9606
52 1P3P 4 C, G Histone H2A 8355
53 3AV1 3 C, G Histone H2A type 1-B/E 9606
54 1M1A 4 C, G Histone H2A.1 8355
55 5CPK 3 C, G Histone H2A type 1-B/E 9606
56 5AY8 3 C, G Histone H2A type 1-B/E 9606
57 3MNN 3 C, G Histone H2A 8355
58 1P3G 4 C, G Histone H2A 8355
59 4J8W 3 C, G Histone H2A 8355
60 1P34 4 C, G Histone H2A 8355
61 5XF3 3 C, G Histone H2A type 1-B/E 9606
62 3X1V 4 C, G Histone H2A type 1-B/E 9606
63 5MLU 3 C, G Histone H2A type 1 8355
64 5ONG 5 C, G Histone H2A 8355
65 5ONW 5 C, G Histone H2A 8355
66 5DNM 3 C, G Histone H2A 8355
67 4Z66 3 C, G Histone H2A 8355
68 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
69 3WTP 3 C, G Histone H2A type 1-B/E 9606
70 2NZD 5 C, G histone H2A 8355
71 3A6N 3 C, G Histone H2A type 1-B/E 9606
72 5DNN 3 C, G Histone H2A 8355
73 5GT3 3 C, G Histone H2A type 1-D 9606 1.2.1.8 | Details
74 3LJA 3 C, G Histone H2A 8355
75 3AZI 3 C, G Histone H2A type 1-B/E 9606
76 3TU4 3 C, G Histone H2A 8355
77 1P3O 4 C, G Histone H2A 8355
78 1KX4 4 C, G histone H2A.1 8355
79 3AZN 3 C, G Histone H2A type 1-B/E 9606
80 1P3M 4 C, G Histone H2A 8355
81 4J8V 3 C, G Histone H2A 8355
82 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
83 3X1S 3 C, G Histone H2A type 1-B/E 9606
84 3LZ0 3 C, G Histone H2A residues 2-120 8355
85 1P3F 4 C, G Histone H2A 8355
86 1P3K 4 C, G Histone H2A 8355
87 5B2I 3 C, G Histone H2A type 1-B/E 9606
88 1P3A 4 C, G Histone H2A 8355
89 3LZ1 3 C, G Histone H2A residues 2-120 8355
90 5GXQ 3 C, G Histone H2A type 1-B/E 9606
91 4Z5T 3 C, G Histone H2A type 1-B/E 9606
92 5XM0 3 C, G Histone H2A type 1-B 10090
93 3AV2 3 C, G Histone H2A type 1-B/E 9606
94 3AYW 3 C, G Histone H2A type 1-B/E 9606
95 5XF5 3 C, G Histone H2A type 1-B/E 9606
96 3AZJ 3 C, G Histone H2A type 1-B/E 9606
97 3REK 3 C, G Histone H2A type1 8355
98 4KGC 3 C, G Histone H2A 8355
99 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
100 5XF4 3 C, G Histone H2A type 1-B/E 9606
101 3REL 3 C, G Histone H2A 8355
102 5GSE 3 C, G, M Histone H2A type 1-B/E 9606
103 3REI 3 C, G Histone H2A type1 8355
104 1P3B 4 C, G Histone H2A 8355
105 3WKJ 3 C, G Histone H2A type 1-B/E 9606
106 3AZK 3 C, G Histone H2A type 1-B/E 9606
107 4J8X 3 C, G Histone H2A 8355
108 3LEL 3 C, G, M, Q Histone H2A 8355
109 4YS3 3 C, G Histone H2A residues 15-121 8355
110 3KUY 3 C, G Histone H2A 8355
111 4R8P 3 C, G Histone H2A 8355
112 3AZM 3 C, G Histone H2A type 1-B/E 9606
113 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
114 3C1C 3 C, G Histone H2A type 1 8355
115 3AZH 3 C, G Histone H2A type 1-B/E 9606
116 5B40 3 C, G Histone H2A type 1-B/E 9606
117 5CPI 3 C, G Histone H2A type 1-B/E 9606
118 3W99 3 C, G Histone H2A type 1-B/E 9606
119 3AZE 3 C, G Histone H2A type 1-B/E 9606
120 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
121 5XM1 3 C, G Histone H2A type 1-B 10090
122 5CPJ 3 C, G Histone H2A type 1-B/E 9606
123 5B24 3 C, G Histone H2A type 1-B/E 9606
124 2HIO 1 A PROTEIN (HISTONE H2A) 9031
125 1HIO 1 A HISTONE H2A 9031
126 4LD9 3 C, G Histone H2A 8355
127 3O62 3 C, G Histone H2A type 1 8355
128 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
129 3W97 3 C, G Histone H2A type 1-B/E 9606
130 4YM5 3 C, G Histone H2A type 1-B/E 9606
131 4YM6 3 C, G Histone H2A type 1-B/E 9606
132 2FJ7 5 C, G histone H2A 8355
133 3W98 3 C, G Histone H2A type 1-B/E 9606
134 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
135 3AN2 3 C, G Histone H2A type 1-B/E 9606
136 3B6F 5 C, G Histone H2A 8355
137 5OY7 4 C, G, K, O, S, W, a, e Histone H2A 8355
138 3B6G 5 C, G Histone H2A 8355
139 5NL0 3 C, G, M Histone H2A type 1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
140 3KXB 3 C, G Histone H2A 8355
141 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
142 5G2E 2 C, G, K, O, S, W HISTONE H2A TYPE 1 8355
143 5HQ2 3 G Histone H2A 8355
144 5OXV 3 C, G, M, Q Histone H2A 8355
145 1ZBB 5 C, G, c, g Histone H2A.1 8355
146 6FQ5 3 C, G Histone H2A 8355
147 6FQ6 3 C, G Histone H2A 8355
148 6FQ8 3 C, G Histone H2A 8355
149 6FML 11 O, S Histone H2A type 1 9606
150 6C0W 3 C, G Histone H2A 9606
151 6BUZ 3 C, G Histone H2A 9606
152 6ETX 7 K, O Histone H2A type 1-B/E 9606
153 6ESF 3 C, G Histone H2A 8355
154 6ESG 3 C, G Histone H2A 8355
155 6ESH 3 C, G Histone H2A 8355
156 6ESI 3 C, G Histone H2A 8355
157 5O9G 3 C, G Histone H2A 8355
158 5X0X 3 C, G Histone H2A 8355
159 5X0Y 3 C, G Histone H2A 8355
160 5KGF 3 C, G Histone H2A type 1 Isopeptide amide crosslink between K15 of H2A and G76 of ubiquitin 9606
161 2RVQ 1 C Histone H2A type 1-B/E 9606
162 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
163 3C9K 1 A, E Histone H2A-IV 9031