Sequence Similarity Clusters for the Entities in PDB 1HQ3

Entity #1 | Chains: A,E
HISTONE H2A-IV protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6667
95 % 12 166 76 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 12 174 73
70 % 13 180 90
50 % 14 191 110
40 % 14 191 131
30 % 14 191 144
Entity #2 | Chains: B,F
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 74 197
95 % 12 161 89 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 12 161 92
70 % 12 173 101
50 % 12 173 133
40 % 12 173 151
30 % 12 173 164
Entity #3 | Chains: C,G
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 817
95 % 17 171 75 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 17 176 78
70 % 17 177 92
50 % 17 181 124
40 % 17 181 145
30 % 17 181 156
Entity #4 | Chains: D,H
HISTONE H4-VI protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 182 55
95 % 17 185 69 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 17 191 72
70 % 17 191 86
50 % 17 191 116
40 % 17 191 139
30 % 17 191 148

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 1 A, E Histone H2A-IV 9031
2 1KX5 5 C, G histone H2A.1 8355
3 2ARO 1 A, E Histone H2A-IV 9031
4 5B0Z 3 C, G Histone H2A type 1-B/E 9606
5 5Y0D 3 C, G Histone H2A type 1-B/E 9606
6 5Y0C 4 C, G Histone H2A type 1-B/E 9606
7 1S32 4 C, G histone H2A 8355
8 5AV8 3 C, G Histone H2A type 1-B/E 9606
9 1KX3 4 C, G histone H2A.1 8355
10 5AV9 3 C, G Histone H2A type 1-B/E 9606
11 5AV6 3 C, G Histone H2A type 1-B/E 9606
12 1HQ3 1 A, E HISTONE H2A-IV 9031
13 3UTA 3 C, G Histone H2A 8355
14 4KHA 2 B Histone H2A UNP residues 15-103 8355
15 5X7X 3 C, G Histone H2A type 1-B/E 9606
16 5B31 3 C Histone H2A type 1-B/E 9606
17 5B1L 3 C, G Histone H2A type 1 10090
18 3UTB 3 C, G Histone H2A 8355
19 1M19 4 C, G Histone H2A.1 8355
20 5AVB 3 C, G Histone H2A type 1-B/E 9606
21 5AVC 3 C, G Histone H2A type 1-B/E 9606
22 5AV5 3 C, G Histone H2A type 1-B/E 9606
23 3C1B 3 C, G Histone H2A type 1 8355
24 5B1M 3 C, G Histone H2A type 1 10090
25 2NQB 4 C, G Histone H2A 7227
26 5OMX 5 C, G Histone H2A 8355
27 5F99 3 C, G Histone H2A type 1 8355
28 5JRG 3 C, G Histone H2A type 1-B/E 9606
29 3UT9 3 C, G Histone H2A 8355
30 5B32 3 C Histone H2A type 1-B/E 9606
31 4WU8 5 C, G Histone H2A type 1 8355
32 1P3I 4 C, G Histone H2A 8355
33 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
34 3AZG 3 C, G Histone H2A type 1-B/E 9606
35 1M18 4 C, G Histone H2A.1 8355
36 5B2J 3 C, G Histone H2A type 1-B/E 9606
37 2PYO 5 C, G Histone H2A 7227
38 1P3L 4 C, G Histone H2A 8355
39 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
40 5B0Y 3 C, G Histone H2A type 1-B/E 9606
41 2CV5 4 C, G Histone H2A.a 9606
42 5CP6 5 C, G Histone H2A 8355
43 5XF6 3 C, G Histone H2A 8355
44 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
45 3MVD 3 C, G Histone H2A 8355
46 4J8U 3 C, G Histone H2A type 1 8355
47 4WU9 3 C, G Histone H2A type 1 8355
48 3REH 3 C, G Histone H2A type 1 8355
49 3AZL 3 C, G Histone H2A type 1-B/E 9606
50 4XZQ 3 C, G Histone H2A residues 15-121 8355
51 3AFA 3 C, G Histone H2A type 1-B/E 9606
52 5E5A 4 C, G Histone H2A 8355
53 3REJ 3 C, G Histone H2A type 1 8355
54 3AZF 3 C, G Histone H2A type 1-B/E 9606
55 5GTC 3 C, G Histone H2A type 1-B/E 9606
56 1P3P 4 C, G Histone H2A 8355
57 3AV1 3 C, G Histone H2A type 1-B/E 9606
58 1M1A 4 C, G Histone H2A.1 8355
59 5CPK 3 C, G Histone H2A type 1-B/E 9606
60 5AY8 3 C, G Histone H2A type 1-B/E 9606
61 3MNN 3 C, G Histone H2A 8355
62 1P3G 4 C, G Histone H2A 8355
63 4J8W 3 C, G Histone H2A 8355
64 1P34 4 C, G Histone H2A 8355
65 5XF3 3 C, G Histone H2A type 1-B/E 9606
66 3X1V 4 C, G Histone H2A type 1-B/E 9606
67 5MLU 3 C, G Histone H2A type 1 8355
68 5ONG 5 C, G Histone H2A 8355
69 5ONW 5 C, G Histone H2A 8355
70 5DNM 3 C, G Histone H2A 8355
71 4Z66 3 C, G Histone H2A 8355
72 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
73 3WTP 3 C, G Histone H2A type 1-B/E 9606
74 3X1T 4 C, G Histone H2A 10090
75 2NZD 5 C, G histone H2A 8355
76 3A6N 3 C, G Histone H2A type 1-B/E 9606
77 5DNN 3 C, G Histone H2A 8355
78 5GT3 3 C, G Histone H2A type 1-D 9606 1.2.1.8 | Details
79 5GT0 3 C, G Histone H2A type 1-A 9606
80 3LJA 3 C, G Histone H2A 8355
81 3AZI 3 C, G Histone H2A type 1-B/E 9606
82 3TU4 3 C, G Histone H2A 8355
83 1P3O 4 C, G Histone H2A 8355
84 1KX4 4 C, G histone H2A.1 8355
85 3AZN 3 C, G Histone H2A type 1-B/E 9606
86 1P3M 4 C, G Histone H2A 8355
87 4J8V 3 C, G Histone H2A 8355
88 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
89 3X1S 3 C, G Histone H2A type 1-B/E 9606
90 3LZ0 3 C, G Histone H2A residues 2-120 8355
91 1P3F 4 C, G Histone H2A 8355
92 1P3K 4 C, G Histone H2A 8355
93 5B2I 3 C, G Histone H2A type 1-B/E 9606
94 1P3A 4 C, G Histone H2A 8355
95 3LZ1 3 C, G Histone H2A residues 2-120 8355
96 5GXQ 3 C, G Histone H2A type 1-B/E 9606
97 4Z5T 3 C, G Histone H2A type 1-B/E 9606
98 5XM0 3 C, G Histone H2A type 1-B 10090
99 3AV2 3 C, G Histone H2A type 1-B/E 9606
100 3AYW 3 C, G Histone H2A type 1-B/E 9606
101 5XF5 3 C, G Histone H2A type 1-B/E 9606
102 3AZJ 3 C, G Histone H2A type 1-B/E 9606
103 3REK 3 C, G Histone H2A type1 8355
104 4KGC 3 C, G Histone H2A 8355
105 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
106 5GSU 3 C, G Histone H2A type 1-A 9606
107 5XF4 3 C, G Histone H2A type 1-B/E 9606
108 3REL 3 C, G Histone H2A 8355
109 5GSE 3 C, G, M Histone H2A type 1-B/E 9606
110 3REI 3 C, G Histone H2A type1 8355
111 1P3B 4 C, G Histone H2A 8355
112 3WKJ 3 C, G Histone H2A type 1-B/E 9606
113 3AZK 3 C, G Histone H2A type 1-B/E 9606
114 4J8X 3 C, G Histone H2A 8355
115 3LEL 3 C, G, M, Q Histone H2A 8355
116 4YS3 3 C, G Histone H2A residues 15-121 8355
117 3KUY 3 C, G Histone H2A 8355
118 4R8P 3 C, G Histone H2A 8355
119 3AZM 3 C, G Histone H2A type 1-B/E 9606
120 3X1U 4 C, G Histone H2A 10090
121 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
122 3C1C 3 C, G Histone H2A type 1 8355
123 3AZH 3 C, G Histone H2A type 1-B/E 9606
124 5B40 3 C, G Histone H2A type 1-B/E 9606
125 5CPI 3 C, G Histone H2A type 1-B/E 9606
126 3W99 3 C, G Histone H2A type 1-B/E 9606
127 3AZE 3 C, G Histone H2A type 1-B/E 9606
128 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
129 5XM1 3 C, G Histone H2A type 1-B 10090
130 5CPJ 3 C, G Histone H2A type 1-B/E 9606
131 5B24 3 C, G Histone H2A type 1-B/E 9606
132 2HIO 1 A PROTEIN (HISTONE H2A) 9031
133 1HIO 1 A HISTONE H2A 9031
134 4QLC 5 C, G Histone H2A 7227
135 4LD9 3 C, G Histone H2A 8355
136 3O62 3 C, G Histone H2A type 1 8355
137 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
138 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
139 3W97 3 C, G Histone H2A type 1-B/E 9606
140 4YM5 3 C, G Histone H2A type 1-B/E 9606
141 4YM6 3 C, G Histone H2A type 1-B/E 9606
142 2FJ7 5 C, G histone H2A 8355
143 3W98 3 C, G Histone H2A type 1-B/E 9606
144 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
145 3AN2 3 C, G Histone H2A type 1-B/E 9606
146 3B6F 5 C, G Histone H2A 8355
147 5OY7 4 C, G, K, O, S, W, a, e Histone H2A 8355
148 3B6G 5 C, G Histone H2A 8355
149 5NL0 3 C, G, M Histone H2A type 1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
150 3KXB 3 C, G Histone H2A 8355
151 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
152 5G2E 2 C, G, K, O, S, W HISTONE H2A TYPE 1 8355
153 5HQ2 3 G Histone H2A 8355
154 5OXV 3 C, G, M, Q Histone H2A 8355
155 1ZBB 5 C, G, c, g Histone H2A.1 8355
156 6FTX 3 C, G Histone H2A type 1 8355
157 6FQ5 3 C, G Histone H2A 8355
158 6FQ6 3 C, G Histone H2A 8355
159 6FQ8 3 C, G Histone H2A 8355
160 6FML 11 O, S Histone H2A type 1 9606
161 6C0W 3 C, G Histone H2A 9606
162 6BUZ 3 C, G Histone H2A 9606
163 6ETX 7 K, O Histone H2A type 1-B/E 9606
164 6ESF 3 C, G Histone H2A 8355
165 6ESG 3 C, G Histone H2A 8355
166 6ESH 3 C, G Histone H2A 8355
167 6ESI 3 C, G Histone H2A 8355
168 5O9G 3 C, G Histone H2A 8355
169 5X0X 3 C, G Histone H2A 8355
170 5X0Y 3 C, G Histone H2A 8355
171 5KGF 3 C, G Histone H2A type 1 Isopeptide amide crosslink between K15 of H2A and G76 of ubiquitin 9606
172 2RVQ 1 C Histone H2A type 1-B/E 9606
173 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
174 3C9K 1 A, E Histone H2A-IV 9031