Sequence Similarity Clusters for the Entities in PDB 1HQ3

Entity #1 | Chains: A,E
HISTONE H2A-IV protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6508
95 % 10 163 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 10 171 74
70 % 11 177 90
50 % 12 187 109
40 % 12 187 132
30 % 12 187 145
Entity #2 | Chains: B,F
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 73 195
95 % 10 157 87 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 10 157 90
70 % 10 169 99
50 % 10 169 134
40 % 10 169 150
30 % 10 169 169
Entity #3 | Chains: C,G
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 795
95 % 15 168 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 15 171 78
70 % 15 172 95
50 % 15 176 124
40 % 15 176 144
30 % 15 176 159
Entity #4 | Chains: D,H
HISTONE H4-VI protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 178 55
95 % 15 181 68 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 15 185 68
70 % 15 185 85
50 % 15 185 115
40 % 15 185 139
30 % 15 185 151

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 1 A, E Histone H2A-IV 9031
2 1KX5 5 C, G histone H2A.1 8355
3 2ARO 1 A, E Histone H2A-IV 9031
4 5B0Z 3 C, G Histone H2A type 1-B/E 9606
5 1S32 4 C, G histone H2A 8355
6 5AV8 3 C, G Histone H2A type 1-B/E 9606
7 1KX3 4 C, G histone H2A.1 8355
8 5AV9 3 C, G Histone H2A type 1-B/E 9606
9 5AV6 3 C, G Histone H2A type 1-B/E 9606
10 1HQ3 1 A, E HISTONE H2A-IV 9031
11 3UTA 3 C, G Histone H2A 8355
12 4KHA 2 B Histone H2A UNP residues 15-103 8355
13 5X7X 3 C, G Histone H2A type 1-B/E 9606
14 5B31 3 C Histone H2A type 1-B/E 9606
15 5B1L 3 C, G Histone H2A type 1 10090
16 3UTB 3 C, G Histone H2A 8355
17 1M19 4 C, G Histone H2A.1 8355
18 5AVB 3 C, G Histone H2A type 1-B/E 9606
19 5AVC 3 C, G Histone H2A type 1-B/E 9606
20 5AV5 3 C, G Histone H2A type 1-B/E 9606
21 3C1B 3 C, G Histone H2A type 1 8355
22 5B1M 3 C, G Histone H2A type 1 10090
23 2NQB 4 C, G Histone H2A 7227
24 5OMX 5 C, G Histone H2A 8355
25 5F99 3 C, G Histone H2A type 1 8355
26 5JRG 3 C, G Histone H2A type 1-B/E 9606
27 3UT9 3 C, G Histone H2A 8355
28 5B32 3 C Histone H2A type 1-B/E 9606
29 4WU8 5 C, G Histone H2A type 1 8355
30 1P3I 4 C, G Histone H2A 8355
31 3MGR 3 C, G Histone H2A UNP RESIDUES 2-120 8355
32 3AZG 3 C, G Histone H2A type 1-B/E 9606
33 1M18 4 C, G Histone H2A.1 8355
34 5B2J 3 C, G Histone H2A type 1-B/E 9606
35 2PYO 5 C, G Histone H2A 7227
36 1P3L 4 C, G Histone H2A 8355
37 1EQZ 2 A, E PROTEIN (HISTONE H2A) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
38 5B0Y 3 C, G Histone H2A type 1-B/E 9606
39 2CV5 4 C, G Histone H2A.a 9606
40 5CP6 5 C, G Histone H2A 8355
41 5XF6 3 C, G Histone H2A 8355
42 3MGP 3 C, G Histone H2A UNP RESIDUES 2-120 8355
43 3MVD 3 C, G Histone H2A 8355
44 4J8U 3 C, G Histone H2A type 1 8355
45 4WU9 3 C, G Histone H2A type 1 8355
46 3REH 3 C, G Histone H2A type 1 8355
47 3AZL 3 C, G Histone H2A type 1-B/E 9606
48 4XZQ 3 C, G Histone H2A residues 15-121 8355
49 3AFA 3 C, G Histone H2A type 1-B/E 9606
50 5E5A 4 C, G Histone H2A 8355
51 3REJ 3 C, G Histone H2A type 1 8355
52 3AZF 3 C, G Histone H2A type 1-B/E 9606
53 5GTC 3 C, G Histone H2A type 1-B/E 9606
54 1P3P 4 C, G Histone H2A 8355
55 3AV1 3 C, G Histone H2A type 1-B/E 9606
56 1M1A 4 C, G Histone H2A.1 8355
57 5CPK 3 C, G Histone H2A type 1-B/E 9606
58 5AY8 3 C, G Histone H2A type 1-B/E 9606
59 3MNN 3 C, G Histone H2A 8355
60 1P3G 4 C, G Histone H2A 8355
61 4J8W 3 C, G Histone H2A 8355
62 1P34 4 C, G Histone H2A 8355
63 5XF3 3 C, G Histone H2A type 1-B/E 9606
64 3X1V 4 C, G Histone H2A type 1-B/E 9606
65 5MLU 3 C, G Histone H2A type 1 8355
66 5ONG 5 C, G Histone H2A 8355
67 5ONW 5 C, G Histone H2A 8355
68 5DNM 3 C, G Histone H2A 8355
69 4Z66 3 C, G Histone H2A 8355
70 3MGQ 3 C, G Histone H2A UNP RESIDUES 2-120 8355
71 3WTP 3 C, G Histone H2A type 1-B/E 9606
72 3X1T 4 C, G Histone H2A 10090
73 2NZD 5 C, G histone H2A 8355
74 3A6N 3 C, G Histone H2A type 1-B/E 9606
75 5DNN 3 C, G Histone H2A 8355
76 5GT3 3 C, G Histone H2A type 1-D 9606 1.2.1.8 | Details
77 5GT0 3 C, G Histone H2A type 1-A 9606
78 3LJA 3 C, G Histone H2A 8355
79 3AZI 3 C, G Histone H2A type 1-B/E 9606
80 3TU4 3 C, G Histone H2A 8355
81 1P3O 4 C, G Histone H2A 8355
82 1KX4 4 C, G histone H2A.1 8355
83 3AZN 3 C, G Histone H2A type 1-B/E 9606
84 1P3M 4 C, G Histone H2A 8355
85 4J8V 3 C, G Histone H2A 8355
86 1AOI 4 C, G HISTONE H2A HISTONE H2A 8355
87 3X1S 3 C, G Histone H2A type 1-B/E 9606
88 3LZ0 3 C, G Histone H2A residues 2-120 8355
89 1P3F 4 C, G Histone H2A 8355
90 1P3K 4 C, G Histone H2A 8355
91 5B2I 3 C, G Histone H2A type 1-B/E 9606
92 1P3A 4 C, G Histone H2A 8355
93 3LZ1 3 C, G Histone H2A residues 2-120 8355
94 5GXQ 3 C, G Histone H2A type 1-B/E 9606
95 4Z5T 3 C, G Histone H2A type 1-B/E 9606
96 5XM0 3 C, G Histone H2A type 1-B 10090
97 3AV2 3 C, G Histone H2A type 1-B/E 9606
98 3AYW 3 C, G Histone H2A type 1-B/E 9606
99 5XF5 3 C, G Histone H2A type 1-B/E 9606
100 3AZJ 3 C, G Histone H2A type 1-B/E 9606
101 3REK 3 C, G Histone H2A type1 8355
102 4KGC 3 C, G Histone H2A 8355
103 1ZLA 4 C, G Xenopus laevis-like histone H2A 263730
104 5GSU 3 C, G Histone H2A type 1-A 9606
105 5XF4 3 C, G Histone H2A type 1-B/E 9606
106 3REL 3 C, G Histone H2A 8355
107 5GSE 3 C, G, M Histone H2A type 1-B/E 9606
108 3REI 3 C, G Histone H2A type1 8355
109 1P3B 4 C, G Histone H2A 8355
110 3WKJ 3 C, G Histone H2A type 1-B/E 9606
111 3AZK 3 C, G Histone H2A type 1-B/E 9606
112 4J8X 3 C, G Histone H2A 8355
113 3LEL 3 C, G, M, Q Histone H2A 8355
114 4YS3 3 C, G Histone H2A residues 15-121 8355
115 3KUY 3 C, G Histone H2A 8355
116 4R8P 3 C, G Histone H2A 8355
117 3AZM 3 C, G Histone H2A type 1-B/E 9606
118 3X1U 4 C, G Histone H2A 10090
119 3MGS 3 C, G Histone H2A UNP RESIDUES 2-120 8355
120 3C1C 3 C, G Histone H2A type 1 8355
121 3AZH 3 C, G Histone H2A type 1-B/E 9606
122 5B40 3 C, G Histone H2A type 1-B/E 9606
123 5CPI 3 C, G Histone H2A type 1-B/E 9606
124 3W99 3 C, G Histone H2A type 1-B/E 9606
125 3AZE 3 C, G Histone H2A type 1-B/E 9606
126 3W96 3 C, G Histone H2A type 1-B/E UNP residues 11-130 9606
127 5XM1 3 C, G Histone H2A type 1-B 10090
128 5CPJ 3 C, G Histone H2A type 1-B/E 9606
129 5B24 3 C, G Histone H2A type 1-B/E 9606
130 2HIO 1 A PROTEIN (HISTONE H2A) 9031
131 1HIO 1 A HISTONE H2A 9031
132 4QLC 5 C, G Histone H2A 7227
133 4LD9 3 C, G Histone H2A 8355
134 3O62 3 C, G Histone H2A type 1 8355
135 4XUJ 3 C, G Histone H2A UNP residues 2-126 8355
136 4X23 5 C, G, M, Q Histone H2A UNP RESIDUES 16-117 7227
137 3W97 3 C, G Histone H2A type 1-B/E 9606
138 4YM5 3 C, G Histone H2A type 1-B/E 9606
139 4YM6 3 C, G Histone H2A type 1-B/E 9606
140 2FJ7 5 C, G histone H2A 8355
141 3W98 3 C, G Histone H2A type 1-B/E 9606
142 4ZUX 3 C, G, M, Q Histone H2A type 1 8355
143 3AN2 3 C, G Histone H2A type 1-B/E 9606
144 3B6F 5 C, G Histone H2A 8355
145 5OY7 4 C, G, K, O, S, W, a, e Histone H2A 8355
146 3B6G 5 C, G Histone H2A 8355
147 5NL0 3 C, G, M Histone H2A type 1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
148 3KXB 3 C, G Histone H2A 8355
149 3KWQ 3 C, G Histone H2A UNP residues 15-121 8355
150 5G2E 2 C, G, K, O, S, W HISTONE H2A TYPE 1 8355
151 5HQ2 3 G Histone H2A 8355
152 5OXV 3 C, G, M, Q Histone H2A 8355
153 1ZBB 5 C, G, c, g Histone H2A.1 8355
154 6FQ5 3 C, G Histone H2A 8355
155 6FQ6 3 C, G Histone H2A 8355
156 6FQ8 3 C, G Histone H2A 8355
157 6FML 11 O, S Histone H2A type 1 9606
158 6C0W 3 C, G Histone H2A 9606
159 6BUZ 3 C, G Histone H2A 9606
160 6ETX 7 K, O Histone H2A type 1-B/E 9606
161 6ESF 3 C, G Histone H2A 8355
162 6ESG 3 C, G Histone H2A 8355
163 6ESH 3 C, G Histone H2A 8355
164 6ESI 3 C, G Histone H2A 8355
165 5O9G 3 C, G Histone H2A 8355
166 5X0X 3 C, G Histone H2A 8355
167 5X0Y 3 C, G Histone H2A 8355
168 5KGF 3 C, G Histone H2A type 1 Isopeptide amide crosslink between K15 of H2A and G76 of ubiquitin 9606
169 2RVQ 1 C Histone H2A type 1-B/E 9606
170 2XQL 1 A, C, E, G, I HISTONE H2A-IV RESIDUES 16-106 9031
171 3C9K 1 A, E Histone H2A-IV 9031