Sequence Similarity Clusters for the Entities in PDB 1HQ1

Entity #1 | Chains: B
4.5S RNA DOMAIN IV rna, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 14 4706
95 % 1 14 5013 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 14 5047
70 % 1 14 4923
50 % 1 17 3825
40 % 1 17 3635
30 % 1 20 2733

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures