Sequence Similarity Clusters for the Entities in PDB 1HQ1

Entity #1 | Chains: B
4.5S RNA DOMAIN IV rna, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 14 3913
95 % 1 14 4681 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 14 4695
70 % 1 14 4591
50 % 1 15 4111
40 % 1 15 3933
30 % 1 18 2875

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.