Sequence Similarity Clusters for the Entities in PDB 1HPB

Entity #1 | Chains: P
HISTIDINE-BINDING PROTEIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29900
95 % 2 3 18148 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 3 17692
70 % 9 10 6538
50 % 9 10 6090
40 % 9 10 5670
30 % 78 86 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4KQP 1 A Glutamine ABC transporter permease and substrate binding protein protein SUBSTRATE BINDING DOMAIN 2, UNP residues 255-484 1358
2 6GGP 1 A Amino acid ABC transporter, periplasmic amino acid-binding protein 2336
3 4I62 1 A Amino acid ABC transporter, periplasmic amino acid-binding protein, putative 1313
4 2YLN 1 A PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID RESIDUES 17-275 485
5 6FT2 1 A Lysine/arginine/ornithine-binding periplasmic protein 28901
6 4LA9 1 A, B Glutamine ABC transporter permease and substrate binding protein protein SUBSTRATE BINDING DOMAIN 1, UNP residues 1-251 1358
7 4OHN 1 A ABC transporter substrate-binding protein 1313
8 4ZEF 1 A Amino acid ABC transporter amino acid-binding/permease residues 266-497 1351
9 4GVO 1 A, B Lmo2349 protein 1639
10 4KPT 1 A, B Glutamine ABC transporter permease and substrate binding protein protein SUBSTRATE BINDING DOMAIN 1, UNP residues 1-251 1358
11 4G4P 1 A Amino acid ABC transporter, amino acid-binding/permease protein 1351
12 4EQ9 1 A ABC transporter substrate-binding protein-amino acid transport UNP residues 34-276 1313
13 4PRS 1 A, B ABC-type transporter, periplasmic subunit family 3 2336
14 4KR5 1 A, B Glutamine ABC transporter permease and substrate binding protein protein SUBSTRATE BINDING DOMAIN 2 1358
15 4YMX 1 A, B ABC-type amino acid transport system, periplasmic component 911092
16 4ZV2 1 A AncQR 32630
17 5EYF 1 A, B Glutamate ABC superfamily ATP binding cassette transporter, binding protein 1352
18 2V25 1 A, B MAJOR CELL-BINDING FACTOR 197
19 4C0R 1 A, B PUTATIVE AMINO ACID BINDING PROTEIN 1309
20 4ZV1 1 A AncQR 32630
21 5LOM 1 A, B Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein UNP residues 36-278 1176649
22 4POW 1 A, B Nopaline-binding periplasmic protein UNP RESIDUES 26-283 1176649
23 4PP0 1 A, B Nopaline-binding periplasmic protein UNP RESIDUES 26-283 1176649
24 3TQL 1 A Arginine-binding protein 777
25 5WJP 1 A Cyclohexadienyl dehydratase UNP RESIDUES 19-255 198252
26 4OEN 1 A, B Second substrate binding domain of putative amino acid ABC transporter 1313
27 3KBR 1 A Cyclohexadienyl dehydratase 287 4.2.1.51 | Details 4.2.1.91 | Details
28 6GPC 1 A, B Amino acid ABC transporter, periplasmic amino acid-binding protein,Amino acid ABC transporter, periplasmic amino acid-binding protein 2336
29 6GPD 1 A, B Amino acid ABC transporter, periplasmic amino acid-binding protein,Amino acid ABC transporter, periplasmic amino acid-binding protein 2336
30 4H5G 1 A, B Amino acid ABC superfamily ATP binding cassette transporter, binding protein 1313
31 1LST 1 A LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN 90371
32 2PVU 1 A ArtJ 1422
33 1II5 1 A Slr1257 protein GluR0 ligand binding core, residues 44-140, 256-385 1148
34 2Q2A 1 A, B, C, D ArtJ 1422
35 5ITP 1 A, B Nopaline-binding periplasmic protein 358
36 4H5F 1 A, B, C, D Amino acid ABC superfamily ATP binding cassette transporter, binding protein 1313
37 5L9M 1 A Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein 1176649
38 3VV5 1 A, B Amino acid ABC transporter, binding protein UNP residues 19-254 274
39 3VVF 1 A, B Amino acid ABC transporter, binding protein UNP residues 19-254 274
40 5OWF 1 A Lysine/arginine/ornithine-binding periplasmic protein 28901
41 1HSL 1 A, B HISTIDINE-BINDING PROTEIN 562
42 2LAO 1 A LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN 90371
43 1LAH 1 E LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN 90371
44 2Y7I 1 A, B STM4351 RESIDUES 18-246 28901
45 5KKW 1 A Cyclohexadienyl dehydratase residues 19-255 198252
46 3DEL 1 B, C, D, F Arginine Binding Protein CT381 813
47 5L9O 1 A, B Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein 1176649
48 1LAF 1 E LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN 90371
49 1LAG 1 E LYSINE, ARGININE, ORNITHINE-BINDING PROTEIN 90371
50 4P0I 1 A, B Nopaline-binding periplasmic protein UNP residues 26-283 1176649
51 1WDN 1 A GLUTAMINE BINDING PROTEIN LIGANDED CLOSE-CLEFT FORM 562
52 1IIT 1 A Slr1257 protein GLUR0 LIGAND BINDING CORE, RESIDUES 44-140, 256-385 1148
53 1IIW 1 A Slr1257 protein GLUR0 LIGAND BINDING CORE, RESIDUES 44-140, 256-385 1148
54 5HPQ 1 A Cyclohexadienyl dehydratase UNP residues 26-268 287 4.2.1.51 | Details 4.2.1.91 | Details
55 5ORG 1 A, B Octopine-binding periplasmic protein 358
56 3HV1 1 A, B Polar amino acid ABC uptake transporter substrate binding protein residues 27-283 1308
57 3I6V 1 A periplasmic His/Glu/Gln/Arg/opine family-binding protein sequence database residues 50-270 89184
58 5JOS 1 A Cyclohexadienyl dehydratase 32630 4.2.1.51 | Details 4.2.1.91 | Details
59 5OTA 1 A, B Nopaline-binding periplasmic protein HHHHHH : Tag 1176649
60 5UH0 1 A, B Membrane-bound lytic murein transglycosylase F UNP residues 35-274 632 4.2.2 | Details
61 3VVE 1 A, B Amino acid ABC transporter, binding protein UNP residues 19-254 274
62 3VVD 1 A, B Amino acid ABC transporter, binding protein UNP residues 19-254 274
63 3N26 1 A Amino acid ABC transporter, periplasmic amino acid-binding protein Soluble domain (UNP residues 23-259) 83558
64 2O1M 1 A, B Probable amino-acid ABC transporter extracellular-binding protein ytmK 1423
65 3KZG 1 A, B, C, D Arginine 3rd transport system periplasmic binding protein sequence database residues 18-245 446
66 5OTC 1 A, B Nopaline-binding periplasmic protein HHHHHH : Tag 1176649
67 2YJP 1 A, B, C PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID RESIDUES 18-284 485
68 5ITO 1 A, B Nopaline-binding periplasmic protein 1176649
69 4POX 1 A, B Nopaline-binding periplasmic protein UNP RESIDUES 26-283 1176649
70 5OT8 1 A, B Nopaline-binding periplasmic protein HHHHHH : Tag 1176649
71 4F3P 1 A, B Glutamine-binding periplasmic protein unp residues 25-250 28450
72 2PYY 1 A, B, C Ionotropic glutamate receptor bacterial homologue 272131
73 1GGG 1 A, B GLUTAMINE BINDING PROTEIN THIS ENTRY REPRESENTS THE OPEN LIGAND FREE STRUCTURE 562
74 5ORE 1 A Octopine-binding periplasmic protein 358
75 5OT9 1 A, B Nopaline-binding periplasmic protein HHHHHH : Tag 1176649
76 4PSH 1 A, B ABC-type transporter, periplasmic subunit family 3 2336
77 3ZSF 1 A, B, C, D, E, F, G, H ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID 485
78 1HPB 1 P HISTIDINE-BINDING PROTEIN 90371
79 6GGV 1 A, B Amino acid ABC transporter, periplasmic amino acid-binding protein 2336
80 3H7M 1 A Sensor protein 35554 2.7.13.3 | Details
81 3K4U 1 A, B, C, D, E, F BINDING COMPONENT OF ABC TRANSPORTER 844
82 2Q2C 1 A, B, C, D ArtJ 1422
83 5T0W 1 A, B, C, D AncCDT-1 32630
84 6BQE 1 A, B, C Arogenate dehydratase 287
85 5TUJ 1 C Ancestral protein CDT-Anc1 32644
86 2M8C 1 A Cationic amino acid ABC transporter, periplasmic binding protein 562