POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

THE THREE-DIMENSIONAL STRUCTURE OF H-2DB AT 2.4 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ANTIGEN-DETERMINANT SELECTION
Sequence Clustering and Redundancy Reduction Results
1HOC
Sequence Clusters for the Sequence Entities in PDB 1HOC
Entity #1: Chains: A - CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN) protein, length: 272 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 41 240
95% 16 45 310
90% 17 47 323
70% 328 535 7
50% 329 540 7
40% 350 568 10
30% 353 590 15
Entity #2: Chains: B - BETA 2-MICROGLOBULIN protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 118 40
95% 88 187 25
90% 88 187 28
70% 396 693 5
50% 405 707 5
40% 405 707 6
30% 405 707 11
Entity #3: Chains: C - 9-RESIDUE PEPTIDE protein, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.