Sequence Similarity Clusters for the Entities in PDB 1HOC

Entity #1 | Chains: A
CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN) protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 61 194
95 % 24 65 249
90 % 25 67 256
70 % 441 716 6
50 % 442 721 6
40 % 475 772 10
30 % 516 896 15
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 68 135 94
95 % 106 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 106 228 65
70 % 538 912 4
50 % 550 934 3
40 % 550 934 7
30 % 550 934 12
Entity #3 | Chains: C
9-RESIDUE PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.