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THE THREE-DIMENSIONAL STRUCTURE OF H-2DB AT 2.4 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ANTIGEN-DETERMINANT SELECTION
Sequence Clustering and Redundancy Reduction Results
1HOC
Sequence Clusters for the Sequence Entities in PDB 1HOC
Entity #1: Chains: A - CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN) protein, length: 272 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 41 245
95% 16 45 317
90% 17 47 330
70% 339 549 7
50% 340 554 7
40% 361 582 11
30% 391 683 13
Entity #2: Chains: B - BETA 2-MICROGLOBULIN protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 123 52
95% 90 192 24
90% 90 192 30
70% 409 711 5
50% 418 725 5
40% 418 725 8
30% 418 725 11
Entity #3: Chains: C - 9-RESIDUE PEPTIDE protein, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.