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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B
Sequence Clustering and Redundancy Reduction Results
1HNZ
Sequence Clusters for the Sequence Entities in PDB 1HNZ
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 90 160
95% 126 220 47
90% 126 220 51
70% 126 220 61
50% 146 298 43
40% 146 298 52
30% 164 353 47
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 218 36
95% 126 219 50
90% 126 219 54
70% 126 219 65
50% 152 304 31
40% 152 304 42
30% 170 357 42
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 220 34
95% 126 220 46
90% 126 220 50
70% 126 220 60
50% 146 298 42
40% 166 358 31
30% 166 359 41
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 183 46
95% 126 227 27
90% 126 227 32
70% 146 309 22
50% 146 310 30
40% 146 310 41
30% 146 310 57
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 221 32
95% 126 221 44
90% 126 221 48
70% 126 221 58
50% 149 303 39
40% 149 303 50
30% 167 358 46
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 219 35
95% 126 219 51
90% 126 219 55
70% 126 220 63
50% 126 220 92
40% 126 220 113
30% 126 220 126
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 223 28
95% 130 228 25
90% 130 228 29
70% 130 228 41
50% 153 311 29
40% 153 312 39
30% 153 312 55
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 215 37
95% 126 220 48
90% 126 220 52
70% 126 220 62
50% 126 220 91
40% 126 221 112
30% 149 301 69
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 80 223
95% 125 214 56
90% 126 218 57
70% 126 218 67
50% 126 218 94
40% 126 218 116
30% 126 218 128
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 49 517
95% 117 194 64
90% 117 194 66
70% 117 194 78
50% 117 194 110
40% 117 194 129
30% 117 194 148
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 223 27
95% 127 223 40
90% 127 223 45
70% 127 223 55
50% 147 301 36
40% 147 301 47
30% 147 301 66
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 364
95% 126 219 49
90% 126 219 53
70% 126 219 64
50% 126 219 93
40% 126 219 114
30% 126 219 127
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 210 39
95% 126 210 59
90% 126 210 62
70% 126 210 72
50% 126 210 98
40% 126 210 120
30% 126 210 133
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 220 30
95% 126 221 41
90% 126 221 46
70% 126 221 56
50% 146 297 41
40% 146 298 51
30% 146 298 68
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 193 45
95% 117 193 65
90% 117 193 67
70% 117 193 79
50% 122 234 78
40% 122 234 99
30% 122 234 118
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 213 38
95% 126 221 42
90% 126 221 47
70% 126 221 57
50% 146 298 40
40% 146 299 49
30% 146 299 67
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 220 33
95% 126 220 45
90% 126 220 49
70% 126 220 59
50% 147 302 35
40% 147 302 46
30% 147 304 64
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 225 24
95% 134 231 23
90% 134 231 28
70% 134 231 39
50% 134 231 82
40% 134 231 104
30% 151 270 77
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 224 26
95% 127 225 38
90% 127 225 42
70% 127 225 52
50% 147 268 49
40% 147 269 60
30% 147 269 80
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 220 31
95% 126 220 43
90% 127 224 43
70% 127 224 53
50% 149 304 33
40% 150 306 44
30% 169 362 40
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.