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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B
Sequence Clustering and Redundancy Reduction Results
1HNZ
Sequence Clusters for the Sequence Entities in PDB 1HNZ
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 89 180
95% 125 219 48
90% 125 219 52
70% 125 219 63
50% 146 300 43
40% 146 300 52
30% 164 364 46
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 217 36
95% 125 218 51
90% 125 218 55
70% 125 218 67
50% 152 306 31
40% 152 306 42
30% 170 368 40
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 219 34
95% 125 219 47
90% 125 219 51
70% 125 219 62
50% 146 300 42
40% 166 369 30
30% 166 370 38
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 182 46
95% 125 226 39
90% 125 226 43
70% 146 311 22
50% 146 312 30
40% 146 312 41
30% 146 312 57
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 220 32
95% 125 220 45
90% 125 220 49
70% 125 220 60
50% 149 305 39
40% 149 305 50
30% 167 369 44
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 218 35
95% 125 218 52
90% 125 218 56
70% 125 219 65
50% 125 219 92
40% 125 219 114
30% 125 219 128
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 222 29
95% 129 227 36
90% 129 227 40
70% 129 227 52
50% 153 313 29
40% 153 314 39
30% 153 314 54
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 214 37
95% 125 219 49
90% 125 219 53
70% 125 219 64
50% 125 219 91
40% 125 220 113
30% 149 303 70
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 80 226
95% 124 213 56
90% 125 217 58
70% 125 217 69
50% 125 217 94
40% 125 217 116
30% 125 217 130
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 49 530
95% 117 194 64
90% 117 194 66
70% 117 194 79
50% 117 194 113
40% 117 194 131
30% 117 194 150
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 222 28
95% 126 222 41
90% 126 222 46
70% 126 222 57
50% 147 303 38
40% 147 303 48
30% 147 303 67
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 371
95% 125 218 50
90% 125 218 54
70% 125 218 66
50% 125 218 93
40% 125 218 115
30% 125 218 129
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 209 40
95% 125 209 59
90% 125 209 62
70% 125 209 73
50% 125 209 100
40% 125 209 123
30% 125 209 135
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 219 30
95% 125 220 42
90% 125 220 47
70% 125 220 58
50% 146 299 41
40% 146 300 51
30% 146 300 69
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 193 45
95% 117 193 65
90% 117 193 67
70% 117 193 80
50% 123 237 77
40% 123 237 102
30% 123 237 121
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 212 38
95% 125 220 43
90% 125 220 48
70% 125 220 59
50% 146 300 40
40% 146 301 49
30% 146 301 68
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 219 33
95% 125 219 46
90% 125 219 50
70% 125 219 61
50% 147 304 37
40% 147 304 47
30% 147 306 63
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 224 25
95% 133 230 24
90% 133 230 29
70% 133 230 41
50% 133 230 83
40% 133 230 108
30% 150 269 80
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 223 27
95% 126 224 40
90% 126 224 44
70% 126 224 55
50% 146 267 51
40% 146 268 64
30% 146 268 83
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 219 31
95% 125 219 44
90% 126 223 45
70% 126 223 56
50% 149 306 35
40% 150 308 43
30% 169 373 37
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.