Sequence Similarity Clusters for the Entities in PDB 1HNZ

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 90 190
95 % 142 239 35
90 % 142 239 40
70 % 142 239 49
50 % 163 324 39
40 % 163 324 49
30 % 181 392 47
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 237 25
95 % 142 238 38
90 % 142 238 43
70 % 142 238 53
50 % 169 330 30
40 % 169 330 40
30 % 187 396 41
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 239 23
95 % 142 239 34
90 % 142 239 39
70 % 142 239 48
50 % 163 324 38
40 % 183 397 27
30 % 183 398 39
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 194 42
95 % 142 246 22
90 % 142 246 27
70 % 163 335 23
50 % 163 336 29
40 % 163 336 39
30 % 163 336 56
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 240 20
95 % 142 240 32
90 % 142 240 37
70 % 142 240 46
50 % 166 329 35
40 % 166 329 46
30 % 184 397 46
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 238 24
95 % 142 238 39
90 % 142 238 44
70 % 142 239 51
50 % 142 239 82
40 % 142 239 108
30 % 142 239 124
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 242 16
95 % 146 247 21
90 % 146 247 26
70 % 146 247 37
50 % 170 337 27
40 % 170 338 38
30 % 170 338 54
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 234 26
95 % 142 239 36
90 % 142 239 41
70 % 142 239 50
50 % 142 239 81
40 % 142 240 106
30 % 166 327 65
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 84 225
95 % 141 233 40
90 % 142 237 45
70 % 142 237 54
50 % 142 237 87
40 % 142 237 113
30 % 142 237 128
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 49 566
95 % 127 205 63
90 % 127 205 66
70 % 127 205 75
50 % 127 205 109
40 % 127 205 129
30 % 127 205 145
Entity #2 | Chains: X
FRAGMENT OF MESSENGER RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 242 15
95 % 143 242 26
90 % 143 242 31
70 % 143 242 42
50 % 164 327 34
40 % 164 327 44
30 % 164 327 60
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 50 370
95 % 142 238 37
90 % 142 238 42
70 % 142 238 52
50 % 142 238 83
40 % 142 238 110
30 % 142 238 126
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 229 39
95 % 142 229 54
90 % 142 229 58
70 % 142 229 69
50 % 142 229 97
40 % 142 229 118
30 % 142 229 133
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 239 17
95 % 142 240 27
90 % 142 240 33
70 % 142 240 43
50 % 163 323 37
40 % 163 324 47
30 % 163 324 63
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 127 204 43
95 % 127 204 64
90 % 127 204 67
70 % 127 204 76
50 % 133 252 68
40 % 133 252 93
30 % 133 252 110
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 232 27
95 % 142 240 28
90 % 142 240 34
70 % 142 240 44
50 % 163 324 36
40 % 163 325 45
30 % 163 325 62
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 239 22
95 % 142 239 33
90 % 142 239 38
70 % 142 239 47
50 % 164 328 33
40 % 164 328 43
30 % 164 330 59
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 244 13
95 % 150 250 20
90 % 150 250 25
70 % 150 250 35
50 % 150 250 70
40 % 150 250 94
30 % 167 289 80
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 143 243 14
95 % 143 244 25
90 % 143 244 29
70 % 143 244 40
50 % 163 289 50
40 % 163 290 62
30 % 163 290 83
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 239 19
95 % 142 239 31
90 % 143 243 30
70 % 143 243 41
50 % 166 330 31
40 % 167 332 41
30 % 186 401 37

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.