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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN
Sequence Clustering and Redundancy Reduction Results
1HNX
Sequence Clusters for the Sequence Entities in PDB 1HNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 113 134
95% 175 255 45
90% 175 255 48
70% 175 255 60
50% 214 363 41
40% 214 363 56
30% 220 399 59
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 252 29
95% 175 254 48
90% 175 254 51
70% 175 254 63
50% 220 369 34
40% 220 369 48
30% 220 374 67
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 255 27
95% 175 255 44
90% 175 255 47
70% 175 255 59
50% 214 363 42
40% 222 403 39
30% 222 403 53
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 224 37
95% 175 262 36
90% 175 262 38
70% 214 375 24
50% 214 375 33
40% 214 375 47
30% 214 375 71
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 256 24
95% 175 256 42
90% 175 256 45
70% 175 256 57
50% 214 365 39
40% 214 365 53
30% 220 401 57
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 254 28
95% 175 254 49
90% 175 254 52
70% 175 254 64
50% 175 254 99
40% 175 254 124
30% 175 254 144
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 258 21
95% 179 263 35
90% 179 263 37
70% 179 263 48
50% 221 376 32
40% 221 376 45
30% 221 376 69
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 250 31
95% 175 255 46
90% 175 255 49
70% 175 255 61
50% 175 255 97
40% 175 255 122
30% 214 363 78
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 92 219
95% 174 249 51
90% 175 253 53
70% 175 253 65
50% 175 253 100
40% 175 253 126
30% 175 253 146
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 463
95% 165 221 64
90% 165 221 68
70% 165 221 81
50% 165 221 116
40% 165 221 144
30% 165 221 166
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 223 38
95% 165 223 63
90% 165 223 67
70% 165 223 80
50% 215 366 38
40% 215 366 52
30% 215 366 75
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 61 359
95% 175 254 47
90% 175 254 50
70% 175 254 62
50% 175 254 98
40% 175 254 123
30% 175 254 143
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 238 34
95% 175 238 55
90% 175 238 59
70% 175 238 71
50% 175 238 110
40% 175 238 133
30% 175 238 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 255 25
95% 175 256 39
90% 175 256 43
70% 175 256 55
50% 175 256 96
40% 214 363 55
30% 214 363 77
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 219 39
95% 164 219 66
90% 164 219 70
70% 164 219 83
50% 179 282 81
40% 179 282 101
30% 179 282 123
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 248 32
95% 175 256 40
90% 175 256 44
70% 175 256 56
50% 214 363 40
40% 214 364 54
30% 214 364 76
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 255 26
95% 175 255 43
90% 175 255 46
70% 175 255 58
50% 215 367 37
40% 215 367 51
30% 215 369 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 260 18
95% 183 266 34
90% 183 266 36
70% 183 266 47
50% 183 266 88
40% 183 266 112
30% 209 313 95
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 259 20
95% 176 260 37
90% 176 260 39
70% 176 260 51
50% 202 308 57
40% 202 309 74
30% 202 309 97
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 255 23
95% 175 255 41
90% 176 259 40
70% 176 259 52
50% 217 369 36
40% 218 371 49
30% 225 408 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.