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An Information Portal to 109093 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN
Sequence Clustering and Redundancy Reduction Results
1HNX
Sequence Clusters for the Sequence Entities in PDB 1HNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 90 160
95% 145 206 42
90% 145 206 44
70% 145 206 53
50% 165 284 42
40% 165 284 52
30% 184 338 49
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 144 204 25
95% 145 205 45
90% 145 205 47
70% 145 205 57
50% 171 290 35
40% 171 290 45
30% 190 342 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 206 23
95% 145 206 41
90% 145 206 43
70% 145 206 52
50% 165 284 41
40% 186 343 34
30% 186 344 45
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 172 33
95% 145 213 32
90% 145 213 35
70% 165 295 24
50% 165 296 34
40% 165 296 44
30% 165 296 67
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 207 20
95% 145 207 39
90% 145 207 41
70% 145 207 50
50% 168 289 39
40% 168 289 49
30% 187 343 48
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 205 24
95% 145 205 46
90% 145 205 48
70% 145 206 55
50% 145 206 85
40% 145 206 110
30% 145 206 129
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 209 18
95% 149 214 30
90% 149 214 33
70% 149 214 43
50% 172 297 33
40% 172 298 43
30% 172 298 65
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 201 29
95% 145 206 43
90% 145 206 45
70% 145 206 54
50% 145 206 84
40% 145 207 109
30% 168 287 74
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 80 223
95% 144 200 47
90% 145 204 49
70% 145 204 58
50% 145 204 87
40% 145 204 112
30% 145 204 131
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 515
95% 134 180 55
90% 134 180 57
70% 134 180 72
50% 134 180 119
40% 134 180 143
30% 134 180 159
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 209 17
95% 146 209 34
90% 146 209 38
70% 146 209 47
50% 166 287 38
40% 166 287 48
30% 166 287 71
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 362
95% 145 205 44
90% 145 205 46
70% 145 205 56
50% 145 205 86
40% 145 205 111
30% 145 205 130
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 196 32
95% 145 196 51
90% 145 196 53
70% 145 196 64
50% 145 196 97
40% 145 196 120
30% 145 196 143
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 206 21
95% 145 207 36
90% 145 207 39
70% 145 207 48
50% 165 283 43
40% 165 284 51
30% 165 284 73
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 179 36
95% 134 179 56
90% 134 179 59
70% 134 179 73
50% 139 220 77
40% 139 220 101
30% 139 220 120
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 199 30
95% 145 207 37
90% 145 207 40
70% 145 207 49
50% 165 284 40
40% 165 285 50
30% 165 285 72
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 206 22
95% 145 206 40
90% 145 206 42
70% 145 206 51
50% 166 288 37
40% 166 288 47
30% 166 290 69
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 211 15
95% 153 217 28
90% 153 217 31
70% 153 217 41
50% 153 217 78
40% 153 217 102
30% 170 256 85
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 210 16
95% 146 211 33
90% 146 211 36
70% 146 211 45
50% 166 254 52
40% 166 255 67
30% 166 255 88
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 206 19
95% 145 206 38
90% 146 210 37
70% 146 210 46
50% 168 290 36
40% 169 292 46
30% 189 347 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.