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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN
Sequence Clustering and Redundancy Reduction Results
1HNX
Sequence Clusters for the Sequence Entities in PDB 1HNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 90 177
95% 159 220 48
90% 159 220 52
70% 159 220 63
50% 180 301 42
40% 180 301 52
30% 199 359 48
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 218 36
95% 159 219 51
90% 159 219 55
70% 159 219 67
50% 186 307 31
40% 186 307 42
30% 205 363 43
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 220 34
95% 159 220 47
90% 159 220 51
70% 159 220 62
50% 180 301 41
40% 201 364 30
30% 201 365 42
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 183 46
95% 159 227 38
90% 159 227 42
70% 180 312 22
50% 180 313 30
40% 180 313 41
30% 180 313 56
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 221 32
95% 159 221 45
90% 159 221 49
70% 159 221 60
50% 183 306 38
40% 183 306 50
30% 202 364 46
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 219 35
95% 159 219 52
90% 159 219 56
70% 159 220 65
50% 159 220 92
40% 159 220 114
30% 159 220 127
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 223 29
95% 163 228 26
90% 163 228 31
70% 163 228 43
50% 187 314 29
40% 187 315 38
30% 187 315 54
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 215 37
95% 159 220 49
90% 159 220 53
70% 159 220 64
50% 159 220 91
40% 159 221 112
30% 183 304 70
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 80 224
95% 158 214 56
90% 159 218 58
70% 159 218 69
50% 159 218 94
40% 159 218 116
30% 159 218 129
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 526
95% 148 194 64
90% 148 194 66
70% 148 194 79
50% 148 194 112
40% 148 194 131
30% 148 194 150
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 223 27
95% 160 223 41
90% 160 223 46
70% 160 223 57
50% 181 304 36
40% 181 304 48
30% 181 304 66
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 370
95% 159 219 50
90% 159 219 54
70% 159 219 66
50% 159 219 93
40% 159 219 115
30% 159 219 128
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 210 40
95% 159 210 59
90% 159 210 62
70% 159 210 73
50% 159 210 99
40% 159 210 121
30% 159 210 135
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 220 30
95% 159 221 42
90% 159 221 47
70% 159 221 58
50% 180 300 40
40% 180 301 51
30% 180 301 69
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 193 45
95% 148 193 65
90% 148 193 67
70% 148 193 80
50% 154 237 76
40% 154 237 101
30% 154 237 118
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 213 38
95% 159 221 43
90% 159 221 48
70% 159 221 59
50% 180 301 39
40% 180 302 49
30% 180 302 68
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 220 33
95% 159 220 46
90% 159 220 50
70% 159 220 61
50% 181 305 35
40% 181 305 47
30% 181 307 62
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 225 24
95% 167 231 24
90% 167 231 29
70% 167 231 41
50% 167 231 83
40% 167 231 107
30% 184 270 79
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 224 26
95% 160 225 40
90% 160 225 44
70% 160 225 55
50% 180 268 51
40% 180 269 62
30% 180 269 81
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 220 31
95% 159 220 44
90% 160 224 45
70% 160 224 56
50% 183 307 34
40% 184 309 43
30% 204 368 40
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.