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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN
Sequence Clustering and Redundancy Reduction Results
1HNX
Sequence Clusters for the Sequence Entities in PDB 1HNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 89 181
95% 158 219 48
90% 158 219 52
70% 158 219 62
50% 179 300 43
40% 179 300 52
30% 198 364 46
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 217 36
95% 158 218 51
90% 158 218 55
70% 158 218 66
50% 185 306 31
40% 185 306 42
30% 204 368 40
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 219 34
95% 158 219 47
90% 158 219 51
70% 158 219 61
50% 179 300 42
40% 200 369 30
30% 200 370 38
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 182 46
95% 158 226 39
90% 158 226 43
70% 179 311 22
50% 179 312 30
40% 179 312 41
30% 179 312 57
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 220 32
95% 158 220 45
90% 158 220 49
70% 158 220 59
50% 182 305 39
40% 182 305 50
30% 201 369 44
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 218 35
95% 158 218 52
90% 158 218 56
70% 158 219 64
50% 158 219 92
40% 158 219 114
30% 158 219 128
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 222 29
95% 162 227 36
90% 162 227 40
70% 162 227 52
50% 186 313 29
40% 186 314 39
30% 186 314 54
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 214 37
95% 158 219 49
90% 158 219 53
70% 158 219 63
50% 158 219 91
40% 158 220 113
30% 182 303 70
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 80 226
95% 157 213 56
90% 158 217 58
70% 158 217 69
50% 158 217 94
40% 158 217 116
30% 158 217 130
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 532
95% 148 194 64
90% 148 194 67
70% 148 194 79
50% 148 194 113
40% 148 194 131
30% 148 194 150
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 222 28
95% 159 222 41
90% 159 222 46
70% 159 222 56
50% 180 303 38
40% 180 303 48
30% 180 303 67
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 371
95% 158 218 50
90% 158 218 54
70% 158 218 65
50% 158 218 93
40% 158 218 115
30% 158 218 129
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 209 40
95% 158 209 59
90% 158 209 62
70% 158 209 73
50% 158 209 100
40% 158 209 123
30% 158 209 135
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 219 30
95% 158 220 42
90% 158 220 47
70% 158 220 57
50% 179 299 41
40% 179 300 51
30% 179 300 69
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 193 45
95% 148 193 65
90% 148 193 68
70% 148 193 80
50% 154 237 77
40% 154 237 102
30% 154 237 121
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 212 38
95% 158 220 43
90% 158 220 48
70% 158 220 58
50% 179 300 40
40% 179 301 49
30% 179 301 68
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 219 33
95% 158 219 46
90% 158 219 50
70% 158 219 60
50% 180 304 37
40% 180 304 47
30% 180 306 63
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 224 25
95% 166 230 24
90% 166 230 29
70% 166 230 41
50% 166 230 83
40% 166 230 108
30% 183 269 80
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 223 27
95% 159 224 40
90% 159 224 44
70% 159 224 54
50% 179 267 51
40% 179 268 64
30% 179 268 83
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 219 31
95% 158 219 44
90% 159 223 45
70% 159 223 55
50% 182 306 35
40% 183 308 43
30% 203 373 37
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.