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An Information Portal to 107049 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN
Sequence Clustering and Redundancy Reduction Results
1HNX
Sequence Clusters for the Sequence Entities in PDB 1HNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 90 140
95% 138 196 43
90% 138 196 45
70% 138 196 56
50% 157 270 41
40% 157 270 55
30% 176 322 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 194 28
95% 138 195 46
90% 138 195 48
70% 138 195 59
50% 163 276 35
40% 163 276 45
30% 182 327 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 196 26
95% 138 196 42
90% 138 196 44
70% 138 196 55
50% 157 270 42
40% 178 326 35
30% 178 326 47
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 165 35
95% 138 203 31
90% 138 203 33
70% 157 282 24
50% 157 282 34
40% 157 282 44
30% 157 282 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 197 23
95% 138 197 38
90% 138 197 40
70% 138 197 52
50% 160 275 39
40% 160 275 52
30% 179 327 48
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 195 27
95% 138 195 47
90% 138 195 49
70% 138 195 60
50% 138 195 93
40% 138 195 116
30% 138 195 139
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 199 19
95% 142 204 30
90% 142 204 32
70% 142 204 44
50% 164 283 33
40% 164 283 43
30% 164 283 68
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 191 29
95% 138 196 44
90% 138 196 46
70% 138 196 57
50% 138 196 90
40% 138 196 114
30% 160 273 77
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 80 221
95% 137 190 49
90% 138 194 50
70% 138 194 61
50% 138 194 94
40% 138 194 117
30% 138 194 141
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 499
95% 128 172 70
90% 128 172 74
70% 128 172 88
50% 128 172 125
40% 128 172 146
30% 128 172 165
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 174 47
95% 128 174 69
90% 128 174 73
70% 128 174 87
50% 158 273 38
40% 158 273 50
30% 158 273 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 354
95% 138 195 45
90% 138 195 47
70% 138 195 58
50% 138 195 92
40% 138 195 115
30% 138 195 138
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 186 32
95% 138 186 51
90% 138 186 54
70% 138 186 66
50% 138 186 111
40% 138 186 134
30% 138 186 152
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 196 24
95% 138 197 35
90% 138 197 38
70% 138 197 50
50% 138 197 89
40% 157 270 54
30% 157 270 76
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 171 48
95% 128 171 73
90% 128 171 76
70% 128 171 90
50% 133 210 77
40% 133 210 101
30% 133 210 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 189 30
95% 138 197 36
90% 138 197 39
70% 138 197 51
50% 157 270 40
40% 157 271 53
30% 157 271 75
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 196 25
95% 138 196 40
90% 138 196 42
70% 138 196 54
50% 158 274 37
40% 158 274 49
30% 158 276 71
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 201 17
95% 146 207 29
90% 146 207 31
70% 146 207 42
50% 146 207 82
40% 146 207 108
30% 162 244 91
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 200 18
95% 139 201 33
90% 139 201 35
70% 139 201 46
50% 158 242 55
40% 158 243 71
30% 158 243 95
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 196 22
95% 138 196 37
90% 139 200 36
70% 139 200 47
50% 160 276 36
40% 161 278 46
30% 181 331 45
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.