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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN
Sequence Clustering and Redundancy Reduction Results
1HNX
Sequence Clusters for the Sequence Entities in PDB 1HNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 90 166
95% 159 220 47
90% 159 220 51
70% 159 220 61
50% 179 300 43
40% 179 300 52
30% 198 355 48
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 218 36
95% 159 219 50
90% 159 219 54
70% 159 219 65
50% 185 306 31
40% 185 306 42
30% 204 359 42
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 220 34
95% 159 220 46
90% 159 220 50
70% 159 220 60
50% 179 300 42
40% 200 360 31
30% 200 361 41
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 183 46
95% 159 227 27
90% 159 227 32
70% 179 311 21
50% 179 312 30
40% 179 312 41
30% 179 312 56
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 221 32
95% 159 221 44
90% 159 221 48
70% 159 221 58
50% 182 305 38
40% 182 305 50
30% 201 360 47
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 219 35
95% 159 219 51
90% 159 219 55
70% 159 220 63
50% 159 220 92
40% 159 220 113
30% 159 220 126
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 223 28
95% 163 228 25
90% 163 228 29
70% 163 228 41
50% 186 313 28
40% 186 314 39
30% 186 314 55
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 215 37
95% 159 220 48
90% 159 220 52
70% 159 220 62
50% 159 220 91
40% 159 221 112
30% 182 303 69
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 80 223
95% 158 214 56
90% 159 218 57
70% 159 218 67
50% 159 218 94
40% 159 218 116
30% 159 218 128
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 517
95% 148 194 64
90% 148 194 66
70% 148 194 78
50% 148 194 111
40% 148 194 129
30% 148 194 148
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 223 27
95% 160 223 40
90% 160 223 45
70% 160 223 55
50% 180 303 35
40% 180 303 47
30% 180 303 65
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 367
95% 159 219 49
90% 159 219 53
70% 159 219 64
50% 159 219 93
40% 159 219 114
30% 159 219 127
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 210 39
95% 159 210 59
90% 159 210 62
70% 159 210 72
50% 159 210 98
40% 159 210 120
30% 159 210 133
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 220 30
95% 159 221 41
90% 159 221 46
70% 159 221 56
50% 179 299 41
40% 179 300 51
30% 179 300 68
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 193 45
95% 148 193 65
90% 148 193 67
70% 148 193 79
50% 153 236 78
40% 153 236 99
30% 153 236 119
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 213 38
95% 159 221 42
90% 159 221 47
70% 159 221 57
50% 179 300 39
40% 179 301 49
30% 179 301 67
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 220 33
95% 159 220 45
90% 159 220 49
70% 159 220 59
50% 180 304 34
40% 180 304 46
30% 180 306 64
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 225 24
95% 167 231 23
90% 167 231 28
70% 167 231 39
50% 167 231 82
40% 167 231 104
30% 184 270 77
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 224 26
95% 160 225 38
90% 160 225 42
70% 160 225 52
50% 180 268 50
40% 180 269 60
30% 180 269 80
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 220 31
95% 159 220 43
90% 160 224 43
70% 160 224 53
50% 182 306 33
40% 183 308 43
30% 203 364 40
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.