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An Information Portal to 109274 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN
Sequence Clustering and Redundancy Reduction Results
1HNX
Sequence Clusters for the Sequence Entities in PDB 1HNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 90 160
95% 148 209 41
90% 148 209 44
70% 148 209 53
50% 168 287 42
40% 168 287 52
30% 187 341 49
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 207 25
95% 148 208 44
90% 148 208 47
70% 148 208 57
50% 174 293 35
40% 174 293 45
30% 193 345 45
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 209 23
95% 148 209 40
90% 148 209 43
70% 148 209 52
50% 168 287 41
40% 189 346 32
30% 189 347 44
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 172 33
95% 148 216 30
90% 148 216 33
70% 168 298 24
50% 168 299 34
40% 168 299 44
30% 168 299 66
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 210 20
95% 148 210 38
90% 148 210 41
70% 148 210 50
50% 171 292 39
40% 171 292 49
30% 190 346 48
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 208 24
95% 148 208 45
90% 148 208 48
70% 148 209 55
50% 148 209 82
40% 148 209 108
30% 148 209 125
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 212 18
95% 152 217 29
90% 152 217 32
70% 152 217 42
50% 175 300 33
40% 175 301 43
30% 175 301 64
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 204 26
95% 148 209 42
90% 148 209 45
70% 148 209 54
50% 148 209 81
40% 148 210 107
30% 171 290 73
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 80 223
95% 147 203 47
90% 148 207 49
70% 148 207 58
50% 148 207 84
40% 148 207 111
30% 148 207 128
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 49 516
95% 137 183 53
90% 137 183 56
70% 137 183 70
50% 137 183 115
40% 137 183 138
30% 137 183 156
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 212 17
95% 149 212 33
90% 149 212 37
70% 149 212 46
50% 169 290 38
40% 169 290 48
30% 169 290 70
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 49 363
95% 148 208 43
90% 148 208 46
70% 148 208 56
50% 148 208 83
40% 148 208 109
30% 148 208 126
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 199 31
95% 148 199 49
90% 148 199 51
70% 148 199 62
50% 148 199 94
40% 148 199 117
30% 148 199 141
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 209 21
95% 148 210 35
90% 148 210 39
70% 148 210 48
50% 168 286 43
40% 168 287 51
30% 168 287 72
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 182 35
95% 137 182 54
90% 137 182 57
70% 137 182 71
50% 142 223 76
40% 142 223 101
30% 142 223 120
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 202 27
95% 148 210 36
90% 148 210 40
70% 148 210 49
50% 168 287 40
40% 168 288 50
30% 168 288 71
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 209 22
95% 148 209 39
90% 148 209 42
70% 148 209 51
50% 169 291 37
40% 169 291 47
30% 169 293 69
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 214 15
95% 156 220 26
90% 156 220 31
70% 156 220 41
50% 156 220 78
40% 156 220 102
30% 173 259 82
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 213 16
95% 149 214 32
90% 149 214 35
70% 149 214 44
50% 169 257 52
40% 169 258 66
30% 169 258 86
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 209 19
95% 148 209 37
90% 149 213 36
70% 149 213 45
50% 171 293 36
40% 172 295 46
30% 192 350 42
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.