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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1HNW
Sequence Clusters for the Sequence Entities in PDB 1HNW
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 90 159
95% 134 199 41
90% 134 199 43
70% 134 199 55
50% 154 277 42
40% 154 277 54
30% 172 330 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 197 29
95% 134 198 46
90% 134 198 48
70% 134 198 61
50% 160 283 35
40% 160 283 45
30% 178 334 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 26
95% 134 199 40
90% 134 199 42
70% 134 199 54
50% 154 277 41
40% 174 335 35
30% 174 336 45
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 166 36
95% 134 206 32
90% 134 206 34
70% 154 288 24
50% 154 289 34
40% 154 289 44
30% 154 289 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 200 23
95% 134 200 38
90% 134 200 40
70% 134 200 51
50% 157 282 39
40% 157 282 50
30% 175 335 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 198 27
95% 134 198 47
90% 134 198 49
70% 134 199 57
50% 134 199 90
40% 134 199 113
30% 134 199 137
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 202 21
95% 138 207 31
90% 138 207 33
70% 138 207 43
50% 161 290 33
40% 161 291 43
30% 161 291 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 194 30
95% 134 199 42
90% 134 199 44
70% 134 199 56
50% 134 199 89
40% 134 200 112
30% 157 280 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 80 223
95% 133 193 50
90% 134 197 50
70% 134 197 62
50% 134 197 94
40% 134 197 117
30% 134 197 139
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 49 513
95% 125 174 72
90% 125 174 76
70% 125 174 90
50% 125 174 131
40% 125 174 149
30% 125 174 164
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 202 20
95% 135 202 34
90% 135 202 37
70% 135 202 47
50% 155 280 38
40% 155 280 49
30% 155 280 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 49 360
95% 134 198 45
90% 134 198 47
70% 134 198 60
50% 134 198 93
40% 134 198 115
30% 134 198 138
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 189 32
95% 134 189 52
90% 134 189 55
70% 134 189 68
50% 134 189 112
40% 134 189 135
30% 134 189 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 24
95% 134 200 35
90% 134 200 38
70% 134 200 48
50% 154 276 43
40% 154 277 52
30% 154 277 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 173 48
95% 125 173 73
90% 125 173 77
70% 125 173 92
50% 130 214 78
40% 130 214 102
30% 130 214 123
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 192 31
95% 134 200 36
90% 134 200 39
70% 134 200 49
50% 154 277 40
40% 154 278 51
30% 154 278 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 25
95% 134 199 39
90% 134 199 41
70% 134 199 52
50% 155 281 37
40% 155 281 48
30% 155 283 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 204 18
95% 142 210 30
90% 142 210 32
70% 142 210 42
50% 142 210 83
40% 142 210 107
30% 159 249 87
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 203 19
95% 135 204 33
90% 135 204 35
70% 135 204 44
50% 155 247 56
40% 155 248 71
30% 155 248 95
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 22
95% 134 199 37
90% 135 203 36
70% 135 203 45
50% 157 283 36
40% 158 285 46
30% 177 339 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.