Sequence Similarity Clusters for the Entities in PDB 1HNW

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 91 197
95 % 178 255 44
90 % 178 255 49
70 % 178 255 58
50 % 206 353 36
40 % 206 353 45
30 % 226 429 39
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 253 35
95 % 178 254 48
90 % 178 254 53
70 % 178 254 63
50 % 212 359 28
40 % 212 359 38
30 % 232 432 35
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 255 33
95 % 178 255 43
90 % 178 255 48
70 % 178 255 57
50 % 206 353 35
40 % 228 434 20
30 % 228 435 33
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 207 46
95 % 178 262 35
90 % 178 262 40
70 % 206 364 22
50 % 206 365 27
40 % 206 365 37
30 % 206 365 56
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 256 31
95 % 178 256 41
90 % 178 256 46
70 % 178 256 55
50 % 209 358 32
40 % 209 358 43
30 % 229 433 38
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 254 34
95 % 178 254 49
90 % 178 254 54
70 % 178 255 60
50 % 178 255 86
40 % 178 255 107
30 % 178 255 120
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 258 27
95 % 182 263 34
90 % 182 263 39
70 % 182 263 49
50 % 213 366 26
40 % 213 367 36
30 % 213 367 55
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 250 36
95 % 178 255 45
90 % 178 255 50
70 % 178 255 59
50 % 178 255 85
40 % 178 256 106
30 % 209 356 61
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 87 224
95 % 177 249 51
90 % 178 253 55
70 % 178 253 64
50 % 178 253 88
40 % 178 253 109
30 % 178 253 123
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 51 608
95 % 161 220 63
90 % 161 220 68
70 % 161 220 78
50 % 161 220 108
40 % 161 220 131
30 % 161 220 142
Entity #2 | Chains: X
FRAGMENT OF MESSENGER RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 258 26
95 % 179 258 37
90 % 179 258 43
70 % 179 258 52
50 % 207 356 31
40 % 207 356 41
30 % 207 356 58
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 51 373
95 % 178 254 47
90 % 178 254 52
70 % 178 254 62
50 % 178 254 87
40 % 178 254 108
30 % 178 254 121
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 245 38
95 % 178 245 53
90 % 178 245 58
70 % 178 245 68
50 % 178 245 93
40 % 178 245 117
30 % 178 245 131
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 255 28
95 % 178 256 38
90 % 178 256 44
70 % 178 256 53
50 % 206 352 34
40 % 206 353 44
30 % 206 353 60
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 219 44
95 % 161 219 64
90 % 161 219 69
70 % 161 219 79
50 % 167 273 78
40 % 167 273 100
30 % 167 273 112
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 248 37
95 % 178 256 39
90 % 178 256 45
70 % 178 256 54
50 % 206 353 33
40 % 206 354 42
30 % 206 354 59
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 255 32
95 % 178 255 42
90 % 178 255 47
70 % 178 255 56
50 % 207 357 30
40 % 207 357 40
30 % 207 359 57
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 260 24
95 % 186 266 33
90 % 186 266 36
70 % 186 266 45
50 % 186 266 83
40 % 186 266 102
30 % 210 312 77
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 259 25
95 % 179 260 36
90 % 179 260 41
70 % 179 260 50
50 % 206 312 52
40 % 206 313 64
30 % 206 313 85
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 255 30
95 % 178 255 40
90 % 179 259 42
70 % 179 259 51
50 % 209 359 29
40 % 210 361 39
30 % 231 438 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.