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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1HNW
Sequence Clusters for the Sequence Entities in PDB 1HNW
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 90 156
95% 134 198 41
90% 134 198 43
70% 134 198 55
50% 154 274 41
40% 154 274 54
30% 172 326 51
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 196 28
95% 134 197 44
90% 134 197 46
70% 134 197 58
50% 160 280 35
40% 160 280 45
30% 178 331 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 198 24
95% 134 198 40
90% 134 198 42
70% 134 198 54
50% 154 274 42
40% 174 330 35
30% 174 330 47
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 165 35
95% 134 205 31
90% 134 205 33
70% 154 286 24
50% 154 286 34
40% 154 286 44
30% 154 286 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 21
95% 134 199 37
90% 134 199 39
70% 134 199 51
50% 157 279 39
40% 157 279 51
30% 175 331 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 197 25
95% 134 197 45
90% 134 197 47
70% 134 197 59
50% 134 197 92
40% 134 197 114
30% 134 197 137
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 201 19
95% 138 206 30
90% 138 206 32
70% 138 206 43
50% 161 287 33
40% 161 287 43
30% 161 287 68
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 193 29
95% 134 198 42
90% 134 198 44
70% 134 198 56
50% 134 198 90
40% 134 198 112
30% 157 277 75
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 80 222
95% 133 192 49
90% 134 196 48
70% 134 196 60
50% 134 196 93
40% 134 196 116
30% 134 196 139
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 49 505
95% 125 174 71
90% 125 174 75
70% 125 174 88
50% 125 174 128
40% 125 174 146
30% 125 174 164
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 176 45
95% 125 176 67
90% 125 176 70
70% 125 176 83
50% 155 277 38
40% 155 277 48
30% 155 277 72
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 49 355
95% 134 197 43
90% 134 197 45
70% 134 197 57
50% 134 197 91
40% 134 197 113
30% 134 197 136
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 188 31
95% 134 188 51
90% 134 188 54
70% 134 188 66
50% 134 188 111
40% 134 188 133
30% 134 188 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 198 22
95% 134 199 34
90% 134 199 37
70% 134 199 48
50% 134 199 88
40% 154 274 53
30% 154 274 74
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 173 48
95% 125 173 72
90% 125 173 76
70% 125 173 90
50% 130 213 75
40% 130 213 102
30% 130 213 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 191 30
95% 134 199 35
90% 134 199 38
70% 134 199 49
50% 154 274 40
40% 154 275 52
30% 154 275 73
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 198 23
95% 134 198 39
90% 134 198 41
70% 134 198 53
50% 155 278 37
40% 155 278 47
30% 155 280 71
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 203 17
95% 142 209 29
90% 142 209 31
70% 142 209 42
50% 142 209 80
40% 142 209 106
30% 159 247 87
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 202 18
95% 135 203 32
90% 135 203 34
70% 135 203 45
50% 155 245 53
40% 155 246 70
30% 155 246 94
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 198 20
95% 134 198 36
90% 135 202 35
70% 135 202 46
50% 157 280 36
40% 158 282 46
30% 177 335 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.