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An Information Portal to 110790 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1HNW
Sequence Clusters for the Sequence Entities in PDB 1HNW
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 90 167
95% 149 220 48
90% 149 220 52
70% 149 220 63
50% 169 300 43
40% 169 300 52
30% 187 356 48
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 218 36
95% 149 219 51
90% 149 219 55
70% 149 219 67
50% 175 306 33
40% 175 306 43
30% 193 360 42
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 220 34
95% 149 220 47
90% 149 220 51
70% 149 220 62
50% 169 300 42
40% 189 361 30
30% 189 362 41
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 183 46
95% 149 227 38
90% 149 227 42
70% 169 311 23
50% 169 312 32
40% 169 312 42
30% 169 312 57
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 221 32
95% 149 221 45
90% 149 221 49
70% 149 221 60
50% 172 305 38
40% 172 305 50
30% 190 361 47
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 219 35
95% 149 219 52
90% 149 219 56
70% 149 220 65
50% 149 220 92
40% 149 220 113
30% 149 220 126
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 223 29
95% 153 228 26
90% 153 228 31
70% 153 228 43
50% 176 313 29
40% 176 314 40
30% 176 314 55
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 215 37
95% 149 220 49
90% 149 220 53
70% 149 220 64
50% 149 220 91
40% 149 221 112
30% 172 303 70
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 80 224
95% 148 214 56
90% 149 218 58
70% 149 218 69
50% 149 218 94
40% 149 218 116
30% 149 218 128
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 49 525
95% 139 194 64
90% 139 194 66
70% 139 194 79
50% 139 194 111
40% 139 194 130
30% 139 194 150
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 223 27
95% 150 223 41
90% 150 223 46
70% 150 223 57
50% 170 303 37
40% 170 303 48
30% 170 303 67
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 49 367
95% 149 219 50
90% 149 219 54
70% 149 219 66
50% 149 219 93
40% 149 219 114
30% 149 219 127
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 210 40
95% 149 210 59
90% 149 210 62
70% 149 210 73
50% 149 210 98
40% 149 210 120
30% 149 210 133
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 220 30
95% 149 221 42
90% 149 221 47
70% 149 221 58
50% 169 299 41
40% 169 300 51
30% 169 300 69
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 193 45
95% 139 193 65
90% 139 193 67
70% 139 193 80
50% 144 236 78
40% 144 236 99
30% 144 236 119
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 213 38
95% 149 221 43
90% 149 221 48
70% 149 221 59
50% 169 300 39
40% 169 301 49
30% 169 301 68
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 220 33
95% 149 220 46
90% 149 220 50
70% 149 220 61
50% 170 304 36
40% 170 304 47
30% 170 306 65
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 225 24
95% 157 231 24
90% 157 231 29
70% 157 231 41
50% 157 231 83
40% 157 231 105
30% 174 270 79
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 224 26
95% 150 225 40
90% 150 225 44
70% 150 225 55
50% 170 268 51
40% 170 269 62
30% 170 269 81
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 220 31
95% 149 220 44
90% 150 224 45
70% 150 224 56
50% 172 306 34
40% 173 308 44
30% 192 365 40
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.