Sequence Similarity Clusters for the Entities in PDB 1HNW

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 91 192
95 % 178 254 45
90 % 178 254 50
70 % 178 254 59
50 % 199 342 37
40 % 199 342 48
30 % 219 416 42
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 252 35
95 % 178 253 48
90 % 178 253 53
70 % 178 253 63
50 % 205 348 28
40 % 205 348 38
30 % 225 420 36
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 254 33
95 % 178 254 44
90 % 178 254 49
70 % 178 254 58
50 % 199 342 36
40 % 221 421 22
30 % 221 422 35
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 206 45
95 % 178 261 35
90 % 178 261 39
70 % 199 353 23
50 % 199 354 27
40 % 199 354 37
30 % 199 354 56
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 255 30
95 % 178 255 41
90 % 178 255 46
70 % 178 255 55
50 % 202 347 33
40 % 202 347 45
30 % 222 421 41
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 253 34
95 % 178 253 49
90 % 178 253 54
70 % 178 254 61
50 % 178 254 86
40 % 178 254 106
30 % 178 254 119
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 257 27
95 % 182 262 34
90 % 182 262 38
70 % 182 262 49
50 % 206 355 26
40 % 206 356 36
30 % 206 356 55
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 249 36
95 % 178 254 46
90 % 178 254 51
70 % 178 254 60
50 % 178 254 85
40 % 178 255 105
30 % 202 345 63
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 87 223
95 % 177 248 50
90 % 178 252 55
70 % 178 252 64
50 % 178 252 88
40 % 178 252 108
30 % 178 252 121
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 51 598
95 % 161 219 63
90 % 161 219 68
70 % 161 219 78
50 % 161 219 108
40 % 161 219 129
30 % 161 219 142
Entity #2 | Chains: X
FRAGMENT OF MESSENGER RNA rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 257 26
95 % 179 257 37
90 % 179 257 43
70 % 179 257 52
50 % 200 345 31
40 % 200 345 42
30 % 200 345 60
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 51 368
95 % 178 253 47
90 % 178 253 52
70 % 178 253 62
50 % 178 253 87
40 % 178 253 107
30 % 178 253 120
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 244 38
95 % 178 244 54
90 % 178 244 57
70 % 178 244 68
50 % 178 244 92
40 % 178 244 114
30 % 178 244 128
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 254 28
95 % 178 255 38
90 % 178 255 44
70 % 178 255 53
50 % 199 341 35
40 % 199 342 47
30 % 199 342 62
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 218 44
95 % 161 218 64
90 % 161 218 69
70 % 161 218 79
50 % 167 269 79
40 % 167 269 97
30 % 167 269 112
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 247 37
95 % 178 255 39
90 % 178 255 45
70 % 178 255 54
50 % 199 342 34
40 % 199 343 44
30 % 199 343 61
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 254 32
95 % 178 254 43
90 % 178 254 48
70 % 178 254 57
50 % 200 346 30
40 % 200 346 41
30 % 200 348 57
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 259 24
95 % 186 265 33
90 % 186 265 36
70 % 186 265 44
50 % 186 265 82
40 % 186 265 100
30 % 203 304 78
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 258 25
95 % 179 259 36
90 % 179 259 41
70 % 179 259 50
50 % 199 304 51
40 % 199 305 63
30 % 199 305 87
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 254 29
95 % 178 254 40
90 % 179 258 42
70 % 179 258 51
50 % 202 348 29
40 % 203 350 39
30 % 224 425 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.