POP-OUT | CLOSE

An Information Portal to 109093 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1HNW
Sequence Clusters for the Sequence Entities in PDB 1HNW
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 90 160
95% 136 206 42
90% 136 206 44
70% 136 206 53
50% 156 284 42
40% 156 284 52
30% 174 338 49
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 204 25
95% 136 205 45
90% 136 205 47
70% 136 205 57
50% 162 290 35
40% 162 290 45
30% 180 342 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 206 23
95% 136 206 41
90% 136 206 43
70% 136 206 52
50% 156 284 41
40% 176 343 34
30% 176 344 45
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 172 33
95% 136 213 32
90% 136 213 35
70% 156 295 24
50% 156 296 34
40% 156 296 44
30% 156 296 67
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 207 20
95% 136 207 39
90% 136 207 41
70% 136 207 50
50% 159 289 39
40% 159 289 49
30% 177 343 48
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 205 24
95% 136 205 46
90% 136 205 48
70% 136 206 55
50% 136 206 85
40% 136 206 110
30% 136 206 129
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 209 18
95% 140 214 30
90% 140 214 33
70% 140 214 43
50% 163 297 33
40% 163 298 43
30% 163 298 65
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 201 29
95% 136 206 43
90% 136 206 45
70% 136 206 54
50% 136 206 84
40% 136 207 109
30% 159 287 74
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 80 223
95% 135 200 47
90% 136 204 49
70% 136 204 58
50% 136 204 87
40% 136 204 112
30% 136 204 131
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 49 515
95% 126 180 55
90% 126 180 57
70% 126 180 72
50% 126 180 119
40% 126 180 143
30% 126 180 159
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 209 17
95% 137 209 34
90% 137 209 38
70% 137 209 47
50% 157 287 38
40% 157 287 48
30% 157 287 71
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 49 362
95% 136 205 44
90% 136 205 46
70% 136 205 56
50% 136 205 86
40% 136 205 111
30% 136 205 130
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 196 32
95% 136 196 51
90% 136 196 53
70% 136 196 64
50% 136 196 97
40% 136 196 120
30% 136 196 143
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 206 21
95% 136 207 36
90% 136 207 39
70% 136 207 48
50% 156 283 43
40% 156 284 51
30% 156 284 73
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 179 36
95% 126 179 56
90% 126 179 59
70% 126 179 73
50% 131 220 77
40% 131 220 101
30% 131 220 120
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 30
95% 136 207 37
90% 136 207 40
70% 136 207 49
50% 156 284 40
40% 156 285 50
30% 156 285 72
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 206 22
95% 136 206 40
90% 136 206 42
70% 136 206 51
50% 157 288 37
40% 157 288 47
30% 157 290 69
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 211 15
95% 144 217 28
90% 144 217 31
70% 144 217 41
50% 144 217 78
40% 144 217 102
30% 161 256 85
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 210 16
95% 137 211 33
90% 137 211 36
70% 137 211 45
50% 157 254 52
40% 157 255 67
30% 157 255 88
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 206 19
95% 136 206 38
90% 137 210 37
70% 137 210 46
50% 159 290 36
40% 160 292 46
30% 179 347 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.