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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1HNW
Sequence Clusters for the Sequence Entities in PDB 1HNW
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 90 158
95% 134 199 41
90% 134 199 43
70% 134 199 55
50% 154 276 41
40% 154 276 54
30% 172 328 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 197 29
95% 134 198 45
90% 134 198 47
70% 134 198 59
50% 160 282 35
40% 160 282 45
30% 178 333 45
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 25
95% 134 199 40
90% 134 199 42
70% 134 199 54
50% 154 276 42
40% 174 332 35
30% 174 332 46
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 166 36
95% 134 206 31
90% 134 206 33
70% 154 288 24
50% 154 288 34
40% 154 288 44
30% 154 288 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 200 22
95% 134 200 38
90% 134 200 40
70% 134 200 51
50% 157 281 39
40% 157 281 50
30% 175 333 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 198 26
95% 134 198 46
90% 134 198 48
70% 134 198 60
50% 134 198 92
40% 134 198 114
30% 134 198 137
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 202 20
95% 138 207 30
90% 138 207 32
70% 138 207 43
50% 161 289 33
40% 161 289 43
30% 161 289 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 194 30
95% 134 199 42
90% 134 199 44
70% 134 199 56
50% 134 199 89
40% 134 199 112
30% 157 279 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 80 222
95% 133 193 50
90% 134 197 49
70% 134 197 61
50% 134 197 93
40% 134 197 116
30% 134 197 138
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 49 507
95% 125 174 71
90% 125 174 75
70% 125 174 88
50% 125 174 128
40% 125 174 146
30% 125 174 164
Entity #2: Chains: X - FRAGMENT OF MESSENGER RNA rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 202 19
95% 135 202 33
90% 135 202 36
70% 135 202 47
50% 155 279 38
40% 155 279 49
30% 155 279 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 49 357
95% 134 198 44
90% 134 198 46
70% 134 198 58
50% 134 198 91
40% 134 198 113
30% 134 198 136
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 189 32
95% 134 189 52
90% 134 189 55
70% 134 189 67
50% 134 189 111
40% 134 189 134
30% 134 189 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 23
95% 134 200 35
90% 134 200 38
70% 134 200 48
50% 134 200 88
40% 154 276 53
30% 154 276 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 173 48
95% 125 173 72
90% 125 173 76
70% 125 173 90
50% 130 214 76
40% 130 214 102
30% 130 214 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 192 31
95% 134 200 36
90% 134 200 39
70% 134 200 49
50% 154 276 40
40% 154 277 51
30% 154 277 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 24
95% 134 199 39
90% 134 199 41
70% 134 199 52
50% 155 280 37
40% 155 280 48
30% 155 282 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 204 17
95% 142 210 29
90% 142 210 31
70% 142 210 42
50% 142 210 82
40% 142 210 107
30% 159 248 87
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 203 18
95% 135 204 32
90% 135 204 34
70% 135 204 44
50% 155 246 53
40% 155 247 70
30% 155 247 94
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 199 21
95% 134 199 37
90% 135 203 35
70% 135 203 45
50% 157 282 36
40% 158 284 46
30% 177 337 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.