Sequence Similarity Clusters for the Entities in PDB 1HNV

Entity #1 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1200
95 % 216 252 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 216 252 97
70 % 216 252 114
50 % 217 253 152
40 % 218 254 165
30 % 218 254 179
Entity #2 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 89 105 206
95 % 211 246 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 211 246 120
70 % 211 246 136
50 % 213 248 159
40 % 213 248 176
30 % 213 248 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures