Sequence Similarity Clusters for the Entities in PDB 1HNI

Entity #1 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 27 1194
95 % 196 256 112 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 196 256 117
70 % 196 256 130
50 % 197 257 157
40 % 198 258 168
30 % 198 258 179
Entity #2 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54388
95 % 191 250 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 191 250 122
70 % 191 250 137
50 % 193 252 164
40 % 193 252 175
30 % 193 252 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures