Sequence Similarity Clusters for the Entities in PDB 1HNI

Entity #1 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 26 1213
95 % 195 255 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 195 255 96
70 % 195 255 113
50 % 196 256 151
40 % 197 257 164
30 % 197 257 176
Entity #2 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53767
95 % 190 249 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 190 249 120
70 % 190 249 135
50 % 192 251 160
40 % 192 251 175
30 % 192 251 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures