Sequence Similarity Clusters for the Entities in PDB 1HMV

Entity #1 | Chains: A,C,E,G
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 107 254
95 % 243 257 113 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 243 257 118
70 % 243 257 131
50 % 244 258 160
40 % 245 259 172
30 % 245 259 190
Entity #2 | Chains: B,D,F,H
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 82 417
95 % 237 251 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 237 251 122
70 % 237 251 139
50 % 239 253 168
40 % 239 253 182
30 % 239 253 203

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures