Sequence Similarity Clusters for the Entities in PDB 1HMV

Entity #1 | Chains: A,C,E,G
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 4208
95 % 235 248 89 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 235 248 94
70 % 235 248 113
50 % 236 249 149
40 % 236 249 164
30 % 236 249 180
Entity #2 | Chains: B,D,F,H
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2618
95 % 229 242 113 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 229 242 117
70 % 229 242 133
50 % 230 243 156
40 % 230 243 175
30 % 230 243 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.