Sequence Similarity Clusters for the Entities in PDB 1HMV

Entity #1 | Chains: A,C,E,G
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 4005
95 % 224 237 106 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 224 237 110
70 % 224 237 126
50 % 225 238 150
40 % 225 238 168
30 % 225 238 184
Entity #2 | Chains: B,D,F,H
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2503
95 % 218 231 112 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 218 231 117
70 % 218 231 135
50 % 219 232 164
40 % 219 232 179
30 % 219 232 193

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.