Sequence Similarity Clusters for the Entities in PDB 1HMV

Entity #1 | Chains: A,C,E,G
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 4270
95 % 239 252 92 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 239 252 96
70 % 239 252 114
50 % 240 253 152
40 % 240 253 166
30 % 240 253 179
Entity #2 | Chains: B,D,F,H
HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2668
95 % 233 246 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 233 246 120
70 % 233 246 135
50 % 234 247 159
40 % 234 247 176
30 % 234 247 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures