Sequence Similarity Clusters for the Entities in PDB 1HMD

Entity #1 | Chains: A,B,C,D
HEMERYTHRIN protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 3983
95 % 3 4 4340 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 4 4383
70 % 3 7 1791
50 % 3 7 1822
40 % 6 10 1640
30 % 6 10 1621

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures