Sequence Similarity Clusters for the Entities in PDB 1HMD

Entity #1 | Chains: A,B,C,D
HEMERYTHRIN protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4074
95 % 3 4 4431 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 4 4470
70 % 3 7 1828
50 % 3 7 1858
40 % 6 10 1677
30 % 6 10 1647

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures