Sequence Similarity Clusters for the Entities in PDB 1HMC

Entity #1 | Chains: A,B
HUMAN MACROPHAGE COLONY STIMULATING FACTOR protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 1448
95 % 3 7 1711 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 7 1747
70 % 3 10 1362
50 % 3 10 1405
40 % 3 10 1391
30 % 3 10 1384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures