Sequence Similarity Clusters for the Entities in PDB 1HMC

Entity #1 | Chains: A,B
HUMAN MACROPHAGE COLONY STIMULATING FACTOR protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 1252
95 % 3 7 1695 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 7 1731
70 % 3 10 1351
50 % 3 10 1399
40 % 3 10 1402
30 % 3 10 1386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures