Sequence Similarity Clusters for the Entities in PDB 1HMC

Entity #1 | Chains: A,B
HUMAN MACROPHAGE COLONY STIMULATING FACTOR protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 1235
95 % 3 7 1666 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 7 1703
70 % 3 10 1339
50 % 3 10 1385
40 % 3 10 1391
30 % 3 10 1374

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures