Sequence Similarity Clusters for the Entities in PDB 1HLT

Entity #1 | Chains: J,L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 296 334 52
95 % 302 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 302 342 67
70 % 302 342 80
50 % 302 342 111
40 % 302 342 135
30 % 302 342 145
Entity #2 | Chains: H,K
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 294 332 53
95 % 335 378 52 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 340 385 56
70 % 356 409 47
50 % 356 409 85
40 % 1668 1884 4
30 % 1677 1898 7
Entity #3 | Chains: R
Thrombomodulin protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures