Sequence Similarity Clusters for the Entities in PDB 1HLT

Entity #1 | Chains: J,L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 300 338 45
95 % 301 339 64
90 % 301 339 67
70 % 302 341 78
50 % 302 341 109
40 % 302 341 132
30 % 302 341 140
Entity #2 | Chains: H,K
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 257 290 75
95 % 335 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 340 384 48
70 % 356 408 46
50 % 356 408 84
40 % 1654 1863 4
30 % 1666 1885 6
Entity #3 | Chains: R
Thrombomodulin protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures