Sequence Similarity Clusters for the Entities in PDB 1HLT

Entity #1 | Chains: J,L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 335 45
95 % 298 336 61
90 % 298 336 66
70 % 299 338 78
50 % 299 338 105
40 % 299 338 128
30 % 299 338 137
Entity #2 | Chains: H,K
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 257 290 57
95 % 332 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 337 381 39
70 % 353 405 45
50 % 353 405 81
40 % 1512 1696 4
30 % 1633 1846 6
Entity #3 | Chains: R
Thrombomodulin protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.