Sequence Similarity Clusters for the Entities in PDB 1HLO

Entity #1 | Chains: C
DNA (5'-D(*CP*AP*CP*CP*AP*CP*GP*TP*GP*GP*T)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*CP*CP*AP*CP*GP*TP*GP*GP*TP*G)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (TRANSCRIPTION FACTOR MAX) protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48660
95 % 1 1 36332 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 1 1 34692
70 % 1 1 30824
50 % 1 1 26353
40 % 1 1 23244
30 % 1 1 19694

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures