Sequence Similarity Clusters for the Entities in PDB 1HLO

Entity #1 | Chains: C
DNA (5'-D(*CP*AP*CP*CP*AP*CP*GP*TP*GP*GP*T)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*CP*CP*AP*CP*GP*TP*GP*GP*TP*G)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (TRANSCRIPTION FACTOR MAX) protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47654
95 % 1 1 35595 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 1 1 34012
70 % 1 1 30268
50 % 1 1 25882
40 % 1 1 22837
30 % 1 1 19349

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.