Sequence Similarity Clusters for the Entities in PDB 1HLA

Entity #1 | Chains: A
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A2) (ALPHA CHAIN) protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 212 212 58
95 % 256 256 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 310 310 36
70 % 740 740 6
50 % 754 754 7
40 % 806 806 9
30 % 930 930 12
Entity #2 | Chains: M
BETA 2-MICROGLOBULIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 666 666 2
95 % 681 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 690 690 4
70 % 944 944 4
50 % 966 966 3
40 % 966 966 6
30 % 966 966 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures