Sequence Similarity Clusters for the Entities in PDB 1HLA

Entity #1 | Chains: A
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A2) (ALPHA CHAIN) protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 204 204 52
95 % 254 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 302 302 35
70 % 719 719 6
50 % 724 724 6
40 % 775 775 10
30 % 899 899 15
Entity #2 | Chains: M
BETA 2-MICROGLOBULIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 618 618 2
95 % 662 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 671 671 4
70 % 916 916 4
50 % 938 938 3
40 % 938 938 7
30 % 938 938 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures