Sequence Similarity Clusters for the Entities in PDB 1HKL

Entity #1 | Chains: L
48G7 FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33779
95 % 5 5 14695 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 2.9
PDBFlex
90 % 413 780 2
70 % 1328 2553 1
50 % 2720 5180 1
40 % 3111 5834 1
30 % 3817 7269 1
Entity #2 | Chains: H
48G7 FAB protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33778
95 % 4 4 17375 Flexibility: Medium
Max RMSD: 7.2, Avg RMSD: 4.0
PDBFlex
90 % 4 5 14313
70 % 1320 2511 2
50 % 2721 5180 1
40 % 3112 5834 1
30 % 3818 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures