Sequence Similarity Clusters for the Entities in PDB 1HKL

Entity #1 | Chains: L
48G7 FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41059
95 % 9 9 7840 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 3.0
PDBFlex
90 % 379 729 3
70 % 1229 2362 1
50 % 2511 4781 1
40 % 2511 4781 1
30 % 2870 5635 1
Entity #2 | Chains: H
48G7 FAB protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40770
95 % 4 4 18514 Flexibility: Medium
Max RMSD: 5.4, Avg RMSD: 3.9
PDBFlex
90 % 4 4 18084
70 % 1218 2311 2
50 % 2512 4781 1
40 % 2512 4781 1
30 % 2871 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures