Sequence Similarity Clusters for the Entities in PDB 1HKD

Entity #1 | Chains: A,C
PEA LECTIN ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9264
95 % 4 5 7131 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 9 19 1231
70 % 9 20 1213
50 % 9 20 1264
40 % 9 20 1276
30 % 9 20 1248
Entity #2 | Chains: B,D
PEA LECTIN BETA CHAIN protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 6857
95 % 4 5 7431 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 5 7376
70 % 9 20 1219
50 % 9 20 1271
40 % 9 20 1284
30 % 9 20 1256

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.