Sequence Similarity Clusters for the Entities in PDB 1HKD

Entity #1 | Chains: A,C
PEA LECTIN ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9378
95 % 4 5 7215 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 9 19 1246
70 % 9 20 1222
50 % 9 20 1279
40 % 9 20 1290
30 % 9 20 1264
Entity #2 | Chains: B,D
PEA LECTIN BETA CHAIN protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 6946
95 % 4 5 7519 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 4 5 7464
70 % 9 20 1228
50 % 9 20 1286
40 % 9 20 1299
30 % 9 20 1274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures