Sequence Similarity Clusters for the Entities in PDB 1HJC

Entity #1 | Chains: A,D
RUNT-RELATED TRANSCRIPTION FACTOR 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 3014
95 % 7 13 2332 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 7 13 2395
70 % 7 13 2384
50 % 7 13 2375
40 % 7 13 2356
30 % 7 13 2255
Entity #2 | Chains: B,E
DNA (5'-(*GP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP* TP*TP*GP*CP*G)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
DNA (5'-(CP*CP*GP*CP*AP*AP*CP*CP*AP*CP*AP* GP*AP*GP*TP*T)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.