Sequence Similarity Clusters for the Entities in PDB 1HJB

Entity #1 | Chains: A,B,D,E
CCAAT/ENHANCER BINDING PROTEIN BETA protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20394
95 % 1 1 18452 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.0
PDBFlex
90 % 1 1 17965
70 % 1 1 16589
50 % 1 1 14468
40 % 1 1 14223
30 % 1 1 11932
Entity #2 | Chains: C,F
RUNT-RELATED TRANSCRIPTION FACTOR 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 3520
95 % 10 13 2448 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 10 13 2521
70 % 10 13 2518
50 % 10 13 2501
40 % 10 13 2453
30 % 10 13 2297
Entity #3 | Chains: G,I
DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: H,J
DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures