Sequence Similarity Clusters for the Entities in PDB 1HJB

Entity #1 | Chains: A,B,D,E
CCAAT/ENHANCER BINDING PROTEIN BETA protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24292
95 % 1 1 20725 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.0
PDBFlex
90 % 1 1 20147
70 % 1 1 18508
50 % 1 1 16061
40 % 1 1 14320
30 % 1 1 12253
Entity #2 | Chains: C,F
RUNT-RELATED TRANSCRIPTION FACTOR 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 3075
95 % 10 13 2369 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.1
PDBFlex
90 % 10 13 2436
70 % 10 13 2426
50 % 10 13 2412
40 % 10 13 2393
30 % 10 13 2283
Entity #3 | Chains: G,I
DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: H,J
DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3') dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures