Sequence Similarity Clusters for the Entities in PDB 1HIO

Entity #1 | Chains: A
HISTONE H2A protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14243
95 % 123 156 80 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 129 164 76
70 % 135 170 85
50 % 145 180 110
40 % 145 180 137
30 % 145 180 140
Entity #2 | Chains: B
HISTONE H2B protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71454
95 % 9 14 1596 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1628
70 % 10 15 1437
50 % 10 15 1486
40 % 10 15 1497
30 % 10 15 1467
Entity #3 | Chains: C
HISTONE H3 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71216
95 % 8 12 2402
90 % 8 12 2468
70 % 8 12 2460
50 % 10 14 2030
40 % 10 14 2021
30 % 10 14 1943
Entity #4 | Chains: D
HISTONE H4 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 13 2075
95 % 12 14 2408
90 % 13 15 2391
70 % 13 15 2391
50 % 13 15 2370
40 % 13 15 2353
30 % 13 15 2245

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures