Sequence Similarity Clusters for the Entities in PDB 1HIO

Entity #1 | Chains: A
HISTONE H2A protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14028
95 % 121 148 80 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 127 156 77
70 % 133 162 87
50 % 143 172 110
40 % 143 172 134
30 % 143 172 143
Entity #2 | Chains: B
HISTONE H2B protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70516
95 % 9 14 1576 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1605
70 % 10 15 1417
50 % 10 15 1467
40 % 10 15 1477
30 % 10 15 1453
Entity #3 | Chains: C
HISTONE H3 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70281
95 % 8 12 2357
90 % 8 12 2419
70 % 8 12 2409
50 % 10 14 1992
40 % 10 14 1983
30 % 10 14 1910
Entity #4 | Chains: D
HISTONE H4 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 13 2033
95 % 12 14 2361
90 % 13 15 2349
70 % 13 15 2344
50 % 13 15 2321
40 % 13 15 2308
30 % 13 15 2206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.