Sequence Similarity Clusters for the Entities in PDB 1HIO

Entity #1 | Chains: A
HISTONE H2A protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 11902
95 % 125 163 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 131 171 74
70 % 137 177 90
50 % 147 187 109
40 % 147 187 132
30 % 147 187 145
Entity #2 | Chains: B
HISTONE H2B protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56584
95 % 9 17 1328 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 9 17 1361
70 % 10 18 1251
50 % 10 18 1313
40 % 10 18 1307
30 % 10 18 1302
Entity #3 | Chains: C
HISTONE H3 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57255
95 % 8 15 1924
90 % 8 15 1965
70 % 8 15 1981
50 % 10 17 1689
40 % 10 17 1681
30 % 10 17 1653
Entity #4 | Chains: D
HISTONE H4 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 18 1595
95 % 12 18 1880
90 % 13 19 1858
70 % 13 19 1873
50 % 13 19 1910
40 % 13 19 1913
30 % 13 19 1817

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures