Sequence Similarity Clusters for the Entities in PDB 1HIO

Entity #1 | Chains: A
HISTONE H2A protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13584
95 % 116 140 86 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 122 148 78
70 % 128 154 90
50 % 138 164 120
40 % 138 164 139
30 % 138 164 152
Entity #2 | Chains: B
HISTONE H2B protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68530
95 % 9 14 1525 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 9 14 1550
70 % 10 15 1375
50 % 10 15 1425
40 % 10 15 1441
30 % 10 15 1417
Entity #3 | Chains: C
HISTONE H3 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68299
95 % 8 12 2277 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 8 12 2341
70 % 8 12 2331
50 % 10 14 1929
40 % 10 14 1928
30 % 10 14 1856
Entity #4 | Chains: D
HISTONE H4 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 13 1947
95 % 12 14 2282 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 1.9
PDBFlex
90 % 13 15 2276
70 % 13 15 2272
50 % 13 15 2247
40 % 13 15 2233
30 % 13 15 2141

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.