Sequence Similarity Clusters for the Entities in PDB 1HIN

Entity #1 | Chains: L
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 12486
95 % 13 13 3638 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 76 83 295
70 % 1515 1841 2
50 % 3685 4537 1
40 % 3685 4537 1
30 % 4346 5342 1
Entity #2 | Chains: H
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 12459
95 % 4 4 11997 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 11 15 2313
70 % 1782 2197 1
50 % 3686 4537 1
40 % 3686 4537 1
30 % 4347 5342 1
Entity #3 | Chains: P
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-107) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.