Sequence Similarity Clusters for the Entities in PDB 1HIM

Entity #1 | Chains: H,J
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 14784
95 % 10 13 4025 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 72 91 270
70 % 1689 2538 1
50 % 3433 5152 1
40 % 3895 5806 1
30 % 4857 7240 1
Entity #2 | Chains: L,M
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12468
95 % 3 4 11953 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 10 16 2332
70 % 1658 2497 2
50 % 3434 5152 1
40 % 3896 5806 1
30 % 4858 7240 1
Entity #3 | Chains: P
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-108) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: R
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-108) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures