Sequence Similarity Clusters for the Entities in PDB 1HIM

Entity #1 | Chains: H,J
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13194
95 % 10 13 3844 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 66 84 306
70 % 1629 2426 1
50 % 3303 4913 1
40 % 3303 4913 1
30 % 3871 5780 1
Entity #2 | Chains: L,M
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13166
95 % 3 4 12654 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 10 15 2464
70 % 1592 2376 2
50 % 3304 4913 1
40 % 3304 4913 1
30 % 3872 5780 1
Entity #3 | Chains: P
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-108) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: R
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 100-108) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures