Sequence Similarity Clusters for the Entities in PDB 1HIL

Entity #1 | Chains: A,C
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13398
95 % 3 13 3887 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 28 84 308
70 % 559 2474 1
50 % 1153 5011 1
40 % 1153 5011 1
30 % 1300 5941 1
Entity #2 | Chains: B,D
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13370
95 % 1 4 12843 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 2 15 2500
70 % 559 2424 2
50 % 1154 5011 1
40 % 1154 5011 1
30 % 1301 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures