Sequence Similarity Clusters for the Entities in PDB 1HIL

Entity #1 | Chains: A,C
IGG2A-KAPPA 17/9 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12609
95 % 3 13 3679 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 28 83 297
70 % 495 2265 1
50 % 1023 4589 1
40 % 1023 4589 1
30 % 1121 5394 1
Entity #2 | Chains: B,D
IGG2A-KAPPA 17/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12582
95 % 1 4 12118 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 2 15 2347
70 % 496 2223 2
50 % 1024 4589 1
40 % 1024 4589 1
30 % 1122 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.