Sequence Similarity Clusters for the Entities in PDB 1HI0

Entity #1 | Chains: D,E,F
DNA (5'-(*TP*TP*TP*CP*C)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P,Q,R
P2 PROTEIN protein, length: 664 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 1070
95 % 13 26 666 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 13 26 691
70 % 13 26 737
50 % 13 26 798
40 % 13 26 827
30 % 13 26 829

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures