Sequence Similarity Clusters for the Entities in PDB 1HHT

Entity #1 | Chains: D,E,F
DNA (5'-(*TP*TP*TP*CP*C)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P,Q,R
P2 PROTEIN protein, length: 664 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 841
95 % 15 26 651 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 15 26 678
70 % 15 26 722
50 % 15 26 772
40 % 15 26 810
30 % 15 26 801

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures