Sequence Similarity Clusters for the Entities in PDB 1HHT

Entity #1 | Chains: D,E,F
DNA (5'-(*TP*TP*TP*CP*C)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P,Q,R
P2 PROTEIN protein, length: 664 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 821
95 % 15 26 638 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 15 26 665
70 % 15 26 711
50 % 15 26 761
40 % 15 26 795
30 % 15 26 787

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.