Sequence Similarity Clusters for the Entities in PDB 1HHO

Entity #1 | Chains: A
HEMOGLOBIN A (OXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 254 12
95 % 182 265 16 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 182 265 17
70 % 208 332 17
50 % 492 754 4
40 % 497 759 7
30 % 953 1293 6
Entity #2 | Chains: B
HEMOGLOBIN A (OXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 151 214 42
95 % 179 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 182 255 21
70 % 224 346 14
50 % 493 754 4
40 % 498 759 7
30 % 954 1293 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures