Sequence Similarity Clusters for the Entities in PDB 1HHJ

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 195 212 58
95 % 237 256 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 287 310 36
70 % 678 740 6
50 % 689 754 7
40 % 729 806 9
30 % 821 930 12
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 603 666 2
95 % 616 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 625 690 4
70 % 840 944 4
50 % 855 966 3
40 % 855 966 6
30 % 855 966 9
Entity #3 | Chains: C,F
HIV-1 REVERSE TRANSCRIPTASE (RESIDUES 309-317) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures