Sequence Similarity Clusters for the Entities in PDB 1HHI

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 182 199 53
95 % 229 249 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 276 297 36
70 % 644 705 6
50 % 646 710 6
40 % 688 761 10
30 % 769 881 15
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 546 607 2
95 % 587 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 596 660 4
70 % 794 898 4
50 % 809 920 3
40 % 809 920 8
30 % 809 920 12
Entity #3 | Chains: C,F
INFLUENZA A MATRIX PROTEIN M1 (RESIDUES 58-66) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.