Sequence Similarity Clusters for the Entities in PDB 1HHI

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 187 204 53
95 % 235 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 285 309 36
70 % 666 732 6
50 % 668 737 7
40 % 710 788 10
30 % 799 919 15
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 566 632 2
95 % 607 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 616 685 4
70 % 823 936 4
50 % 838 958 3
40 % 838 958 7
30 % 838 958 12
Entity #3 | Chains: C,F
INFLUENZA A MATRIX PROTEIN M1 (RESIDUES 58-66) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures