Sequence Similarity Clusters for the Entities in PDB 1HHH

Entity #1 | Chains: A
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 201 204 52
95 % 251 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 299 302 35
70 % 708 717 6
50 % 710 722 6
40 % 759 773 10
30 % 880 897 15
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 601 618 2
95 % 644 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 653 671 4
70 % 894 914 4
50 % 915 936 3
40 % 915 936 7
30 % 915 936 12
Entity #3 | Chains: C
HEPATITIS B NUCLEOCAPSID PROTEIN (RESIDUES 18-27) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.