Sequence Similarity Clusters for the Entities in PDB 1HHH

Entity #1 | Chains: A
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 212 215 57
95 % 257 260 61 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 311 314 37
70 % 748 757 6
50 % 759 771 7
40 % 809 823 9
30 % 933 950 11
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 669 686 2
95 % 683 701 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 692 710 4
70 % 944 964 4
50 % 965 986 3
40 % 965 986 6
30 % 965 986 9
Entity #3 | Chains: C
HEPATITIS B NUCLEOCAPSID PROTEIN (RESIDUES 18-27) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures