Sequence Similarity Clusters for the Entities in PDB 1HHH

Entity #1 | Chains: A
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 196 199 53
95 % 246 249 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 294 297 36
70 % 696 705 6
50 % 698 710 6
40 % 747 761 10
30 % 864 881 15
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 591 607 2
95 % 634 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 643 660 4
70 % 879 898 4
50 % 900 920 3
40 % 900 920 8
30 % 900 920 12
Entity #3 | Chains: C
HEPATITIS B NUCLEOCAPSID PROTEIN (RESIDUES 18-27) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.