Sequence Similarity Clusters for the Entities in PDB 1HHH

Entity #1 | Chains: A
CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 214 217 57
95 % 259 262 61 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 313 316 38
70 % 762 771 6
50 % 773 785 7
40 % 823 837 9
30 % 947 964 12
Entity #2 | Chains: B
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 684 701 2
95 % 698 716 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 707 725 4
70 % 959 979 4
50 % 980 1001 3
40 % 980 1001 6
30 % 980 1001 9
Entity #3 | Chains: C
HEPATITIS B NUCLEOCAPSID PROTEIN (RESIDUES 18-27) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures